Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02586 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTACTCTTGTGTTGACCACGTTTCGTGAGATAATGGAGAGGCTTCCAGAGACAGAAGAAGATACATCTTGTGCAGTGTGCTTGAACCAGATGAAGATGGAAGATGAGGTTAGGGAACTAATGAACTGCTACCATGTCTTCCACAGAGAATGCATCGACAAATGGTTGGACAATGATGACAACAACCAGAACCCTACTTGCCCTCTTTGTAGAGCACCTTTGCTCACTCTTAATCATTGCAGTTATTCTTCATCAGAGAGCTCTTTTGGTTGTGTGCCACCATCTACTCAACCTAGTTGGGCTGTGGAGAGACTTCTCTACCTCTTCGGAGATGATCTTCTTCCTTGCTAG 399 0.4336 MGFYAEDSSSAYGWTIGQAIYEAXLIIAVLRWVLCLVFRLIKDRGTTPSSSSSSSSSSSSSSSSCTLVLTTFREIMERLPETEEDTSCAVCLNQMKMEDEVRELMNCYHVFHRECIDKWLDNDDNNQNPTCPLCRAPLLTLNHCSYSSSESSFGCVPPSTQPSWAVERLLYLFGDDLLPC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02586 180 SUPERFAMILY RING/U-box 82 141 - -
Arst1g02586 180 SMART ringv_2 87 135 IPR011016 GO:0008270
Arst1g02586 180 ProSiteProfiles Zinc finger RING-type profile. 88 135 IPR001841 -
Arst1g02586 180 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 178 - -
Arst1g02586 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 139 IPR013083 -
Arst1g02586 180 SMART ring_2 88 134 IPR001841 -
Arst1g02586 180 Pfam Ring finger domain 87 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02586 Arst-Chr1 87631156 87631845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02586 1 177 C3H Transcription Factor Family AT5G20885 47.059 2.06e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02586 K16281 - gmx:111138523 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02586 1 87631156 87631845 Arst1g02586 1 87631156 87631845 ECH