Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02258 ATGAAGTGCATAAAGAACGAGACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGCTTAAGAAGACTTTTAAGCTTTCAGTTCTCTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGCAAGCTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAGGAAGGTCAAGGATCTACATAGCCTCAACACCAAACAAATCCAAGAAAATACACAGGTAAAGGAAGGTGATGACATCAACATCACAAAGAAGCTAGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATTCATGCCCCATTGAAGAGTTACAACAGATAGAGAATCAGCTCGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATAGAGACGCTAAAGGAACAGGAAAAATGCCTTCTTGAAGAAAATAGAAAATTGAAAGAGAAGGTAATTATCTTTCCTCATGTACTTCATATTATCCCCAATTGA 534 0.382 MKCIKNETSRQVTFSKRRNGLLKKTFKLSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQRKVKDLHSLNTKQIQENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIETLKEQEKCLLEENRKLKEKVIIFPHVLHIIPN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02258 177 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Arst1g02258 177 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Arst1g02258 177 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Arst1g02258 177 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Arst1g02258 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Arst1g02258 177 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Arst1g02258 177 Gene3D - 6 79 IPR036879 GO:0003677|GO:0046983
Arst1g02258 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 146 - -
Arst1g02258 177 Coils Coil 115 164 - -
Arst1g02258 177 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Arst1g02258 177 FunFam Agamous-like MADS-box protein AGL13 6 72 - -
Arst1g02258 177 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst1g02258 177 Pfam K-box region 89 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02258 Arst-Chr1 61257891 61264343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02258 1 166 MADS-box Gene Family AT4G22950 62.651 6.02e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst1g02258 K-box 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02258 - - adu:107489337 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02258 1 61257891 61264343 Arst1g02258 1 61257891 61264343 ECH