Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02254 ATGGCTTCAATTCTTCAATATTGTAGCTTTAGTAGCTTTTTGTTGGTTACATTAACATGCATGTTCACAACCATTGGAAATGGAGCATTAGCAACGGGCATATTTAGACCTAGTGATTGGGCTCTTGCACATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTTCGAACGGTTATGGAACAGACACAGCAGCATTGAGCTCAACCTTGTTCAACAATGGATATGCATGTGGGACTTGTTATCAGATAAAGTGCTACCAATCGAGTGCATGTAATGCCAATGTGCCCTACACCACTGTAACCGCCACAAATCTTTGTCCTCCTAATTGGGCCGAGCCCTCTGATAATGGCGGTTGGTGTACCCCACCAAGGGCCCATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGACTGCTGGCATTGTGCCTGTTCTCTACCGCAGAGTTGCATGCGAAAGGAGTGGGGGCCTTCGATTCGCAATGCAAGGAAATGGGTACTGGGTATTGGTGTATGTGATGAATGTGGGAGGTGGTGGAGACATAAGCAGCATGTGGGTCAAAGGAAGCACAACAGAGTGGATCGCTATGACCCACAATTGGGGTGCTTCTTACCAAGCATTTGCTTCACTCTCTTCTCAACCTCTATCCTTCAAGATTACTTCTTTAACTACCAAACAGACCATCATTGCTTGGAATGTTGCTCCTTCTAATTGGGCCGTTGGACTCACTTATTCCACCAATCTCAACTTCCATTGA 801 0.4594 MASILQYCSFSSFLLVTLTCMFTTIGNGALATGIFRPSDWALAHATFYGDESASATMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACNANVPYTTVTATNLCPPNWAEPSDNGGWCTPPRAHFDMSKPAFMKIAQWTAGIVPVLYRRVACERSGGLRFAMQGNGYWVLVYVMNVGGGGDISSMWVKGSTTEWIAMTHNWGASYQAFASLSSQPLSFKITSLTTKQTIIAWNVAPSNWAVGLTYSTNLNFH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02254 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Arst1g02254 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Arst1g02254 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Arst1g02254 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Arst1g02254 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Arst1g02254 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Arst1g02254 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Arst1g02254 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Arst1g02254 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Arst1g02254 266 CDD DPBB_EXPA_N 39 166 - -
Arst1g02254 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Arst1g02254 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Arst1g02254 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Arst1g02254 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Arst1g02254 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Arst1g02254 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Arst1g02254 266 Gene3D - 172 266 IPR036749 -
Arst1g02254 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Arst1g02254 266 Gene3D - 29 167 IPR036908 -
Arst1g02254 266 SMART dpbb_1 75 161 IPR007112 -
Arst1g02254 266 PANTHER EXPANSIN-A15 13 261 IPR002963 GO:0009664
Arst1g02254 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Arst1g02254 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Arst1g02254 266 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02254 Arst-Chr1 60178509 60185052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02254 1 266 Expansin Gene Family AT1G12560 60.526 2.30e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02254 - - lang:109349912 454.136