Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02242 ATGTATAAGCCGGATGAAGAAAAAACCTCATTCATCACACCCAGAGCGAACTATTACTATGTGGTCATGCCTTTTGGATTAAAAAATGCTGGAGCCACATACCAAAGATTGATGAATAAGGTGTTCGCTCCCCACCTCGGGAACTTACTGGAGGTCTACGTGGACGACATACTGGTAAAAACCAAGGAGAATATCGACCTCTTGACAGATCTCTCGCAAGTCTTCAACACCGTAAGGTCACTTGGGATGAGACTAAATCCTACAAAATGTACCTTTGCGGTGGAGGCTAGAAAATTTCTAGGATTCATGCTAACACAAAGGGGGATCGAAGCAAATCCCGACAAGTGCAAAGCTATTCTAGAAATGAAAAGCCCGACTTGTCTAAGAAAGATTCAACAATTGAACGGCCGACTTGCTGCCCTCTCCAGGTTCCTGGCGGGATCAGCACTGAGATCCCTTCCACTGTTCTCTCTACTAAGAAAAGGATGCCAGTTCGAACGGACTCCGGAATGCGAAGAAGCATTCCAGGAGTTCAAAAGGTTTTTGAGCCAACCTCTGATTCTGACCCGACCCATAGTCGGGGAAGAACTCGTCCTGTATCTGTCCGTAGCAGACAAAGCTGTAGCATCAGCTCTAATACGGGAAGATGAGGTCGGGCATCATCCTGTGTACTTCACCAACAAAGTTCTACAAGAACCTGAATTAAAGTATCAAAAACTTGAAAAACTGACGAGCAGTAGCGGTAGGTCCGCCAACGCTGGAAGCGTGACCGCCGCTAGTAGCCAAGATTGGGCCGCCATTAAGATTCAATCCGCCTTCCGAGGATGTTTGGCAAGGAGAGCATTACGGGCACTGAAAGGATTAGTTAAGCTTCAAGCACTTGTGAGAGGCCACATCGAAAGAAAGCGAACAGCACAACAGATGAAAAAATGGCAAGCACTTTTAAGAGCACAAGCTAGAGTCTGTGCTCGCAGAGTTCATATCCTTCAAGCCCCAAATTCCACTTCTAAGTCACCTTCCTGCCACCTTCATGGGCCAGCAACACCAGACAAGTTTGAAAGCCCAATCAGATCTAAGAGCATGAAAGATGAGCACTCACCATTGCTTAAGAGAAATGGCTCCAAATCATGCCTCCAGCAGGTCCATGGTAGTAGCGGGCAAGAGAAATGTAGGAACAAATCAGAAAGGCACATAGATGAACTAACATGGAACCAAGAAAAATCATCAATGAGAACCTCTAGCACCACCAATGGTGACAAAAGTGACAAGAACCCTGAAATTGATTCCAGAAGATCACAAGCCACGTCATCATCAAGACGTAGGAACCTCTTTTCCACCACCAACAACCATGTCTTAGTTTCTGATCAGCATTGCATTAGTAGCAAGAGTTACACCACAAGCAACCACAACAACAACAACAAGGAATCATCATCAGTGATATCTCTTCAATCAGGCCCAAGCCCATCTTGTGAGGTCCAGTCTCAGAGCCCAATGAAGCCCAATTGGGTTGAGGAGAGCCCATTCTGTACAGCTGAAAACAGCCCCCAATACCTATCAGCATCTTCCAAAGATAATGTACCCAAAAGAAGCCCTTTTGGTGGGTCAAGGAGTTATATTTGTGACTATTCTGATTACCCAAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAAGTGAGGTCTCTTAGTGCCCCAAAACAAAGGCCCAACCAATGTGATAGGTCTAGTTCATCTACTAGGTACTCACTCAATGGATTGGGTTGTCAGAGGCCCAATTATGCTTTGCAAGGATGCTTCACCAACAAGGGTTATCCAGGTTCTGGTCGTTTGGACAAGCTTGGAATGCCTGTGGGATATAGATTCTAA 1866 0.4561 MYKPDEEKTSFITPRANYYYVVMPFGLKNAGATYQRLMNKVFAPHLGNLLEVYVDDILVKTKENIDLLTDLSQVFNTVRSLGMRLNPTKCTFAVEARKFLGFMLTQRGIEANPDKCKAILEMKSPTCLRKIQQLNGRLAALSRFLAGSALRSLPLFSLLRKGCQFERTPECEEAFQEFKRFLSQPLILTRPIVGEELVLYLSVADKAVASALIREDEVGHHPVYFTNKVLQEPELKYQKLEKLTSSSGRSANAGSVTAASSQDWAAIKIQSAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQQMKKWQALLRAQARVCARRVHILQAPNSTSKSPSCHLHGPATPDKFESPIRSKSMKDEHSPLLKRNGSKSCLQQVHGSSGQEKCRNKSERHIDELTWNQEKSSMRTSSTTNGDKSDKNPEIDSRRSQATSSSRRRNLFSTTNNHVLVSDQHCISSKSYTTSNHNNNNKESSSVISLQSGPSPSCEVQSQSPMKPNWVEESPFCTAENSPQYLSASSKDNVPKRSPFGGSRSYICDYSDYPSYMACTESSKAKVRSLSAPKQRPNQCDRSSSSTRYSLNGLGCQRPNYALQGCFTNKGYPGSGRLDKLGMPVGYRF 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02242 621 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 4 29 - -
Arst1g02242 621 MobiDBLite consensus disorder prediction 405 420 - -
Arst1g02242 621 Gene3D - 114 197 IPR043128 -
Arst1g02242 621 MobiDBLite consensus disorder prediction 333 449 - -
Arst1g02242 621 SUPERFAMILY DNA/RNA polymerases 1 243 IPR043502 -
Arst1g02242 621 ProSiteProfiles IQ motif profile. 286 313 IPR000048 GO:0005515
Arst1g02242 621 Pfam RNase H-like domain found in reverse transcriptase 168 242 IPR041577 -
Arst1g02242 621 MobiDBLite consensus disorder prediction 388 404 - -
Arst1g02242 621 CDD RT_LTR 1 103 - -
Arst1g02242 621 Gene3D - 261 314 - -
Arst1g02242 621 MobiDBLite consensus disorder prediction 463 506 - -
Arst1g02242 621 MobiDBLite consensus disorder prediction 421 435 - -
Arst1g02242 621 Pfam IQ calmodulin-binding motif 264 283 IPR000048 GO:0005515
Arst1g02242 621 MobiDBLite consensus disorder prediction 355 370 - -
Arst1g02242 621 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 104 IPR000477 -
Arst1g02242 621 Pfam Protein of unknown function (DUF4005) 515 583 IPR025064 -
Arst1g02242 621 Gene3D - 30 104 IPR043128 -
Arst1g02242 621 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 13 103 IPR000477 -
Arst1g02242 621 ProSiteProfiles IQ motif profile. 262 290 IPR000048 GO:0005515
Arst1g02242 621 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 1 336 - -
Arst1g02242 621 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02242 Arst-Chr1 59500005 59510478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02242 242 621 IQD Protein Family AT4G23060 38.902 1.15e-57 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02242 - - adu:107490560 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02242 1 59500005 59510478 Arst5g01149 5 11807463 11810581 PCT