LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g02242	ATGTATAAGCCGGATGAAGAAAAAACCTCATTCATCACACCCAGAGCGAACTATTACTATGTGGTCATGCCTTTTGGATTAAAAAATGCTGGAGCCACATACCAAAGATTGATGAATAAGGTGTTCGCTCCCCACCTCGGGAACTTACTGGAGGTCTACGTGGACGACATACTGGTAAAAACCAAGGAGAATATCGACCTCTTGACAGATCTCTCGCAAGTCTTCAACACCGTAAGGTCACTTGGGATGAGACTAAATCCTACAAAATGTACCTTTGCGGTGGAGGCTAGAAAATTTCTAGGATTCATGCTAACACAAAGGGGGATCGAAGCAAATCCCGACAAGTGCAAAGCTATTCTAGAAATGAAAAGCCCGACTTGTCTAAGAAAGATTCAACAATTGAACGGCCGACTTGCTGCCCTCTCCAGGTTCCTGGCGGGATCAGCACTGAGATCCCTTCCACTGTTCTCTCTACTAAGAAAAGGATGCCAGTTCGAACGGACTCCGGAATGCGAAGAAGCATTCCAGGAGTTCAAAAGGTTTTTGAGCCAACCTCTGATTCTGACCCGACCCATAGTCGGGGAAGAACTCGTCCTGTATCTGTCCGTAGCAGACAAAGCTGTAGCATCAGCTCTAATACGGGAAGATGAGGTCGGGCATCATCCTGTGTACTTCACCAACAAAGTTCTACAAGAACCTGAATTAAAGTATCAAAAACTTGAAAAACTGACGAGCAGTAGCGGTAGGTCCGCCAACGCTGGAAGCGTGACCGCCGCTAGTAGCCAAGATTGGGCCGCCATTAAGATTCAATCCGCCTTCCGAGGATGTTTGGCAAGGAGAGCATTACGGGCACTGAAAGGATTAGTTAAGCTTCAAGCACTTGTGAGAGGCCACATCGAAAGAAAGCGAACAGCACAACAGATGAAAAAATGGCAAGCACTTTTAAGAGCACAAGCTAGAGTCTGTGCTCGCAGAGTTCATATCCTTCAAGCCCCAAATTCCACTTCTAAGTCACCTTCCTGCCACCTTCATGGGCCAGCAACACCAGACAAGTTTGAAAGCCCAATCAGATCTAAGAGCATGAAAGATGAGCACTCACCATTGCTTAAGAGAAATGGCTCCAAATCATGCCTCCAGCAGGTCCATGGTAGTAGCGGGCAAGAGAAATGTAGGAACAAATCAGAAAGGCACATAGATGAACTAACATGGAACCAAGAAAAATCATCAATGAGAACCTCTAGCACCACCAATGGTGACAAAAGTGACAAGAACCCTGAAATTGATTCCAGAAGATCACAAGCCACGTCATCATCAAGACGTAGGAACCTCTTTTCCACCACCAACAACCATGTCTTAGTTTCTGATCAGCATTGCATTAGTAGCAAGAGTTACACCACAAGCAACCACAACAACAACAACAAGGAATCATCATCAGTGATATCTCTTCAATCAGGCCCAAGCCCATCTTGTGAGGTCCAGTCTCAGAGCCCAATGAAGCCCAATTGGGTTGAGGAGAGCCCATTCTGTACAGCTGAAAACAGCCCCCAATACCTATCAGCATCTTCCAAAGATAATGTACCCAAAAGAAGCCCTTTTGGTGGGTCAAGGAGTTATATTTGTGACTATTCTGATTACCCAAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAAGTGAGGTCTCTTAGTGCCCCAAAACAAAGGCCCAACCAATGTGATAGGTCTAGTTCATCTACTAGGTACTCACTCAATGGATTGGGTTGTCAGAGGCCCAATTATGCTTTGCAAGGATGCTTCACCAACAAGGGTTATCCAGGTTCTGGTCGTTTGGACAAGCTTGGAATGCCTGTGGGATATAGATTCTAA	1866	0.4561	MYKPDEEKTSFITPRANYYYVVMPFGLKNAGATYQRLMNKVFAPHLGNLLEVYVDDILVKTKENIDLLTDLSQVFNTVRSLGMRLNPTKCTFAVEARKFLGFMLTQRGIEANPDKCKAILEMKSPTCLRKIQQLNGRLAALSRFLAGSALRSLPLFSLLRKGCQFERTPECEEAFQEFKRFLSQPLILTRPIVGEELVLYLSVADKAVASALIREDEVGHHPVYFTNKVLQEPELKYQKLEKLTSSSGRSANAGSVTAASSQDWAAIKIQSAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQQMKKWQALLRAQARVCARRVHILQAPNSTSKSPSCHLHGPATPDKFESPIRSKSMKDEHSPLLKRNGSKSCLQQVHGSSGQEKCRNKSERHIDELTWNQEKSSMRTSSTTNGDKSDKNPEIDSRRSQATSSSRRRNLFSTTNNHVLVSDQHCISSKSYTTSNHNNNNKESSSVISLQSGPSPSCEVQSQSPMKPNWVEESPFCTAENSPQYLSASSKDNVPKRSPFGGSRSYICDYSDYPSYMACTESSKAKVRSLSAPKQRPNQCDRSSSSTRYSLNGLGCQRPNYALQGCFTNKGYPGSGRLDKLGMPVGYRF	621

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst1g02242	621	Gene3D	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	4	29	-	-
Arst1g02242	621	MobiDBLite	consensus disorder prediction	405	420	-	-
Arst1g02242	621	Gene3D	-	114	197	IPR043128	-
Arst1g02242	621	MobiDBLite	consensus disorder prediction	333	449	-	-
Arst1g02242	621	SUPERFAMILY	DNA/RNA polymerases	1	243	IPR043502	-
Arst1g02242	621	ProSiteProfiles	IQ motif profile.	286	313	IPR000048	GO:0005515
Arst1g02242	621	Pfam	RNase H-like domain found in reverse transcriptase	168	242	IPR041577	-
Arst1g02242	621	MobiDBLite	consensus disorder prediction	388	404	-	-
Arst1g02242	621	CDD	RT_LTR	1	103	-	-
Arst1g02242	621	Gene3D	-	261	314	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g02242	Arst-Chr1	59500005	59510478	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g02242	242	621	IQD Protein Family	AT4G23060	38.902	1.15e-57	200

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g02242	-		-	adu:107490560	1222.22

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst1g02242	1	59500005	59510478	Arst5g01149	5	11807463	11810581	PCT

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