Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02154 ATGGAACACACTGAATCCGATTCTGCTTCTTCCTCACTTCCCAATGGCGGTGGTGACTGCATCACCGCCACCCAACAAGACCCTCAACTTGCTCCTTCTTCCAATCACGGCACCGACGATCCTCAGCCGTCAGATCTCTATCAAACGGCTCAGGATGGTTCACTCTCGGCTGAGCTTCAGAGTAAGCTGGATTTGAAGGGTTTGGAAGGTGTGGGCGAAGAGGGTGGCGAGATTGGGGATAAAGTTTCAAACTTTGGCCAAGTTGGTGGTGGTGTTGATGATGGGGGTGTTACTAATGGTGACGATGAAGTTGTAAATGGTGGTGATGAGGGTTTTAAAGGTGGTGGTGCTGATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGTGGGTCTTGTGGATGGTGATTATGACGGGTTAGTTAATGAATATGTTGATGCTGATGGGGGTGATGATGTTGATGGGGTTGAGAATAGGGAAGAGAAAAGTGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCAGGATTGTGCATTTTATATGAAGACTGGGAATTGCAAATTTGGAATCAATTGCAAGTTCAATCACCCAATTAATAGGAGGAAAAACCAGGCTGTTAAAGAGCGGCCAGCAGAAAGAGAGGAAGAGCAAGCAGAGAGACCAGGACAGACAGAATGCAAGTATTATTTAAGGTCCGGGGGTTGTAAGTTTGGAAAAGATTGTAAATATAACCATACAAAAGGAAAAGATTTAACAACCGAGGAGGTGGCAGAACTCAATTTTCTTGGTCTGCCTATTCGTCTGGTATGATATATGAAGCTTCTTTCATAATACCATCTTTTATCTGTTTCCGGCTCGTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGACCCTACAACTGTTGGAGGTTCTGAATCATCTCCAGGGAATGGAGGATCTGATCCTTCTTCACGGTATAGTAATGGACGATCTAATACTTCTTCAGGGTATAGTAATGGAGGATCTATTTCATTACGTGGTGTATCGCAGCAGTCTGTCTCAACATGGTCTTCTCCAAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCGCCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCACCTCCGCCATATGTCATGAACAATCCAGTGATCGAAACAAATGTTTATATACACCCACAAAAAAGAATTCAACTTGATGACTTTCCTGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAATGCCTGCATGCATTACACACGATACGGACTCTGTAAGTTTGGACCGGCTTGTAAGTATGACCATCCGATAAACCCAGTGCCCCCAACTGGTGTTGAAGTTGATGGGATGGGTGGAAATGGAGGTGCTGTTCAGTAA 1581 0.4503 MEHTESDSASSSLPNGGGDCITATQQDPQLAPSSNHGTDDPQPSDLYQTAQDGSLSAELQSKLDLKGLEGVGEEGGEIGDKVSNFGQVGGGVDDGGVTNGDDEVVNGGDEGFKGGGADGDNWGWETNSWEEENVNVGLVDGDYDGLVNEYVDADGGDDVDGVENREEKSGGGRAQHQYPWRPDAQDCAFYMKTGNCKFGINCKFNHPINRRKNQAVKERPAEREEEQAERPGQTECKYYLRSGGCKFGKDCKYNHTKGKDLTTEEVAELNFLGLPIRLVCXYMKLLSXYHLLSVSGSCKFGANCKFNHPDPTTVGGSESSPGNGGSDPSSRYSNGRSNTSSGYSNGGSISLRGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPPYVMNNPVIETNVYIHPQKRIQLDDFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKNACMHYTRYGLCKFGPACKYDHPINPVPPTGVEVDGMGGNGGAVQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02154 527 MobiDBLite consensus disorder prediction 309 376 - -
Arst1g02154 527 SUPERFAMILY CCCH zinc finger 233 257 IPR036855 GO:0046872
Arst1g02154 527 MobiDBLite consensus disorder prediction 149 177 - -
Arst1g02154 527 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Arst1g02154 527 MobiDBLite consensus disorder prediction 1 125 - -
Arst1g02154 527 PANTHER PROTEIN PHOSPHATASE RELATED 79 507 - -
Arst1g02154 527 Gene3D - 220 314 - -
Arst1g02154 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 482 505 IPR000571 GO:0046872
Arst1g02154 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 435 460 IPR000571 GO:0046872
Arst1g02154 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 309 IPR000571 GO:0046872
Arst1g02154 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872
Arst1g02154 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 255 IPR000571 GO:0046872
Arst1g02154 527 Gene3D - 432 513 - -
Arst1g02154 527 MobiDBLite consensus disorder prediction 7 58 - -
Arst1g02154 527 MobiDBLite consensus disorder prediction 310 376 - -
Arst1g02154 527 SUPERFAMILY CCCH zinc finger 481 508 IPR036855 GO:0046872
Arst1g02154 527 SUPERFAMILY CCCH zinc finger 180 210 IPR036855 GO:0046872
Arst1g02154 527 SUPERFAMILY CCCH zinc finger 438 463 IPR036855 GO:0046872
Arst1g02154 527 ProSiteProfiles Zinc finger C3H1-type profile. 279 311 IPR000571 GO:0046872
Arst1g02154 527 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Arst1g02154 527 SMART c3hfinal6 433 460 IPR000571 GO:0046872
Arst1g02154 527 SMART c3hfinal6 480 506 IPR000571 GO:0046872
Arst1g02154 527 SMART c3hfinal6 291 310 IPR000571 GO:0046872
Arst1g02154 527 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Arst1g02154 527 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Arst1g02154 527 Gene3D - 157 219 - -
Arst1g02154 527 ProSiteProfiles Zinc finger C3H1-type profile. 433 461 IPR000571 GO:0046872
Arst1g02154 527 ProSiteProfiles Zinc finger C3H1-type profile. 479 507 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02154 Arst-Chr1 52457646 52461701 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02154 142 510 C3H Transcription Factor Family AT1G04990 31.926 5.18e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst1g02154 zf-CCCH 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02154 - - adu:107491206 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02154 1 52457646 52461701 Arst3g02798 3 42003650 42007268 ECH
Arst1g02154 1 52457646 52461701 Arst1g02154 1 52457646 52461701 ECH
Arst1g02154 1 52457646 52461701 Arst3g02798 3 42003650 42007268 PCT