Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02140 ATGACAACCACTTCCCTTCTCTTTCTCTTTCTCTTCTCTCTCCTCTTCCCGGCCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGCTCAAGAAGTGACCAGGCAAATCAATGCGTCTGTTGCTAGGAGGAACTTGGGGTACTTGTCTTGCGGGACAGGTAACCCAATCGACGACTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACAGACAGAGGCTTGCAGACTGCGCTATCGGCTTCGGGAAGAACGCCATTGGCGGAAGGGACGGAAAAATCTACGTGGTGACTGATTCTGCTGATGACAACCCAGTGAACCCCAAGCCGGGGACGCTTCGCTATGCAGTGATTCAGGACGAGCCCCTATGGATCATATTCGCAAGGGACATGGTGATTCAGTTGAAGGAAGAACTTATAATGAACTCCTTCAAGACCATAGATGGGAGAGGTGCTAGCGTGCACATTGCTGGTGGACCATGCATAACAATTCAGTATGTGAATAACGTTATAATACATGGTATTCACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCACGGCACTACGGGTGGAGGACTCTATCGGACGGTGATGGGGTCTCCATATTTGGCGGGAGCCACGTGTGGGTTGATCATTGCTCCTTGTCTAACTGCAGGGACGGTTTGATTGATGCCATTCACGGCTCCACCGCAATTACAATTTCTAACAATTACATGACGCACCATGATAAGGTTATGTTGTTGGGTCATAGTGATACATATACACAAGACAAGAATATGCAGGTTACTATTGCTTTTAACCACTTCGGTGAAGGCCTTGTTCAGAGAATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCCATTGGTGGAAGTGCCAACCCAACCATCAATAGCCAAGGCAACAGATTTGTAGCACCAAATGACAGGTTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAGGGGTTGGAATTGGAGGTCAGAAGGGGACTTATTGGTAAATGGTGCATTTTTCACTGCATCTGGTGCTGGAGCCTCTTCAAGTTATGCAAGGGCTTCAAGTTTGAGTGCAAGACCATCCACTCTTGTGGGCACTATAACAACTGGTGCAGGTGCACTCGTTTGTAAGAGGGGTTCTCGTTGCTGA 1218 0.4819 MTTTSLLFLFLFSLLFPALISSSPVQDPELVAQEVTRQINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSADDNPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVNNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWRGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSTLVGTITTGAGALVCKRGSRC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02140 405 Gene3D - 56 398 IPR012334 -
Arst1g02140 405 SMART amb_all 131 328 IPR002022 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Arst1g02140 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Arst1g02140 405 PANTHER PECTATE LYASE 18-RELATED 27 403 IPR045032 GO:0030570
Arst1g02140 405 SUPERFAMILY Pectin lyase-like 38 399 IPR011050 -
Arst1g02140 405 Pfam Pectate lyase 139 322 IPR002022 -
Arst1g02140 405 FunFam Pectate lyase 56 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02140 Arst-Chr1 51714933 51717251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02140 5 405 Polysaccharide Lyase AT5G63180 82.134 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02140 K01728 - gmx:100101868 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02140 1 51714933 51717251 Arst3g02804 3 42064254 42068281 ECH
Arst10g01000 10 9716089 9719116 Arst1g02140 1 51714933 51717251 ECH
Arst3g02804 3 42064254 42068281 Arst1g02140 1 51714933 51717251 ECH
Arst1g02140 1 51714933 51717251 Arst1g02140 1 51714933 51717251 ECH
Arst1g02140 1 51714933 51717251 Arst3g02804 3 42064254 42068281 PCT