LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g01983	ATGTCATCATCCTCCTCCTCTTCTTCTTCTTCAACTACATTATCACTGGACCACATCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACTGTCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACGGTGACGGTGCGATGCGGCCATTGCACCAATCTGCTGCCGGTGAACATGCGAGGCCTTCTTCTTCCATCGCCCAATCAATTCCATTTGAGGAGATTCCGAATCCATCCCCAAATTTCTTCATGAACCAGACAAACACACCAAATGAATTCTCCATGCCTACTAGGACTGTTGTTGATGAGCTTCCACGCCCACCTATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCATCCGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGAGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAAGAGGTTCTGATGAAAGATGCTGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTGA	626	0.4792	MSSSSSSSSSSTTLSLDHIPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHFGHSFFSPTHNLLEEIPNPSPNFFMNQTNTPNEFSMPTRTVVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVRQQEGEEVLMKDAGFYASANVGVSPY	220

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst1g01983	220	CDD	HMG-box_SF	137	173	-	-
	Arst1g01983	220	FunFam	Axial regulator YABBY	128	199	-	-
	Arst1g01983	220	SUPERFAMILY	HMG-box	127	176	IPR036910	-
	Arst1g01983	220	PANTHER	PROTEIN YABBY 6-RELATED	5	195	IPR006780	GO:0007275
	Arst1g01983	220	Gene3D	High mobility group box domain	128	201	IPR036910	-
	Arst1g01983	220	Pfam	YABBY protein	21	183	IPR006780	GO:0007275

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g01983	Arst-Chr1	42328714	42332389	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g01983	32	218	C2C2-YABBY Transcription Factor Family	AT4G00180	60.766	8.56e-67	203

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-YABBY	Arst1g01983		YABBY	4.8e-70	CL0114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g01983	K25796		-	gmx:100798441	404.445