Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01960 ATGGAAGGCATTCCAATAGGGAGGAAACTCAACATATTAGCACATGGAAGCTACCATGAGCTTGTTAAGAGACTTGAGAACATGTTCGACACCACCATTCTCTGGGGTACAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTATTCACTTATGAAGATGACGGAGGAGATCTTGTTATGATTGGGGATGTTCCTTGGGATTTGTTTCCCCCTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCACTACCTTTTGA 273 0.4322 MEGIPIGRKLNILAHGSYHELVKRLENMFDTTILWGTEMDEVVVQPGERCHVFTYEDDGGDLVMIGDVPWDLFPPVKRLKITRVDTFTTF 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01960 90 Gene3D - 1 90 - -
Arst1g01960 90 SUPERFAMILY CAD & PB1 domains 2 74 - -
Arst1g01960 90 ProSiteProfiles PB1 domain profile. 1 86 IPR000270 GO:0005515
Arst1g01960 90 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 84 IPR003311 GO:0005634|GO:0006355
Arst1g01960 90 Pfam AUX/IAA family 1 83 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01960 Arst-Chr1 40450534 40453433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01960 1 73 B3 DNA Binding Superfamily AT1G59750 34.667 2.92e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Arst1g01960 AUX_IAA 1.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01960 K14484 - gmx:100818376 136.732