Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01828 ATGGAGCTTAATTTGAAGCGCCAGATCGGAATTTTTTGTGTTCTATTGATCTTACCAGCACTATGCAGTGCTGCGTTTACAAAATCCAGAGCAACATTTTATAGTACCTCTGATGGTTTAGGGACTCCAACTGGACGCTGTGGGTACGGCGACTATGGAAGGACGGTCCACGGAGGAAGTGTCGCCGGTGTGTCAAACCTCTGGAGGGATGGAGTTGGCTGTGGTCTTTGTTATCAGGTGAGGTGCACAAACCCATCGCTGTGCAACAGTAATGGAGCATACTTGGTGGTAACAGACTACGGTGCAGGAGATAGAACAGATTTCATAATGAGCCCAGCGGCCTTCTCAAGTTTGGGAGTCAACTCAACAGCAAATGATGAACTCAGGAAACTAGGCACCGTTGATATTGAATACCAGAGGATTTCATGCAGTTACCCTGGCCAAAACATTGTCATCAAAATCAAAGAGAGTAGCACCAACCCTGGTTACTTGTCTATTGTACTTTTCAATGTTGGTGGAACATGCGATGTCATTGCTGTTCAGTTGTCGCAGTCGGGCAGCAACACATGGGTTTCTTTGCAGAGGGTGGACGGTGCAGTTTTTCAGATTTCAAACCCGCCAAGTGGGACCCTCAGATTCAGATTCCAAGTTAATTGCGGTTCTGGACTTGAATGGAGGCTCCCCAAGAATGACATCCCTGCTAACTGGAGGGCTGGTGCCACTTATGACACTGGCATTCAGTTTTAA 747 0.4712 MELNLKRQIGIFCVLLILPALCSAAFTKSRATFYSTSDGLGTPTGRCGYGDYGRTVHGGSVAGVSNLWRDGVGCGLCYQVRCTNPSLCNSNGAYLVVTDYGAGDRTDFIMSPAAFSSLGVNSTANDELRKLGTVDIEYQRISCSYPGQNIVIKIKESSTNPGYLSIVLFNVGGTCDVIAVQLSQSGSNTWVSLQRVDGAVFQISNPPSGTLRFRFQVNCGSGLEWRLPKNDIPANWRAGATYDTGIQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01828 248 PANTHER EXPANSIN-B3 18 248 - -
Arst1g01828 248 SUPERFAMILY Barwin-like endoglucanases 12 147 IPR036908 -
Arst1g01828 248 Gene3D - 20 144 IPR036908 -
Arst1g01828 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Arst1g01828 248 Pfam Expansin C-terminal domain 151 226 IPR007117 -
Arst1g01828 248 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Arst1g01828 248 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Arst1g01828 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Arst1g01828 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Arst1g01828 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Arst1g01828 248 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Arst1g01828 248 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Arst1g01828 248 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Arst1g01828 248 PRINTS Major pollen allergen Lol pI signature 62 73 IPR005795 GO:0005576|GO:0019953
Arst1g01828 248 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Arst1g01828 248 PRINTS Major pollen allergen Lol pI signature 82 92 IPR005795 GO:0005576|GO:0019953
Arst1g01828 248 Pfam Lytic transglycolase 61 138 IPR009009 -
Arst1g01828 248 Gene3D - 145 248 IPR036749 -
Arst1g01828 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 244 IPR007117 -
Arst1g01828 248 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01828 Arst-Chr1 34296285 34298640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01828 14 246 Expansin Gene Family AT4G17030 48.936 7.25e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01828 - - gmx:100779487 299.671