Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01792 ATGGAACTTAGTTTAAAGCACCAAGTTGGGCTTATGTGTGTTATATTACTCTTACCTTCGCTATGTAGCTCACAGGATTCTTTCACTGATTCCAGAGCAACCTATTATGGCAGCCCTGATTGCTATGGCAATCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACAGTCAATGATGGCAGTGTTGCAGCGGTGTCTAGGCTATGGAGGAATGGAACTGGCTGTGGTGCATGCTACCAGGCAAGGTGCAAATTAGAGCAATACTGCGACGAGGAGGGAACCTACGTGGTGGTAACAGACTACGGCGAAGGAGACAGAACAGACTTCGTTTTGAGCCCACGCGCCTACAAGAAGTTGGGACGAAACGATAAAGCTGCAGCAGAGCTATTCAAATATGGTGTGGTTGACATTGAATACCGAAGGGTCCCTTGCAGATATGAAGGCTACAACATTGTCTTTAAGGTCCATGAACGAAGCAAGAATCCTGAATACTTTGCTGTTGTCATTCTCTATGTTAATGGTGCTTATGATGTAACTGCTGTTCAGTTGTGGCAGGAAGATTGCCAAGAATGGACAGAAATGAGGAGGGTTTATGGGGCAGTGTTTGATTATGCCAATCCACCAAGTGGTGAAATCAATTTGAGGTTCCAAGTGAGTGGCAGTGCAGGTATCTATTGGGTGCAATCCCAGAATGCTATTCCTAGTGATTGGACTGCTGGAGCTGCTTATGATTCACAGGTTCAGCTTACTTAA 756 0.4563 MELSLKHQVGLMCVILLLPSLCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAAVSRLWRNGTGCGACYQARCKLEQYCDEEGTYVVVTDYGEGDRTDFVLSPRAYKKLGRNDKAAAELFKYGVVDIEYRRVPCRYEGYNIVFKVHERSKNPEYFAVVILYVNGAYDVTAVQLWQEDCQEWTEMRRVYGAVFDYANPPSGEINLRFQVSGSAGIYWVQSQNAIPSDWTAGAAYDSQVQLT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01792 251 CDD DPBB_EXLB_N 29 145 - -
Arst1g01792 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Arst1g01792 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Arst1g01792 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Arst1g01792 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Arst1g01792 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Arst1g01792 251 PANTHER EXPANSIN-B3 16 249 - -
Arst1g01792 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Arst1g01792 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Arst1g01792 251 Gene3D - 19 145 IPR036908 -
Arst1g01792 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Arst1g01792 251 Pfam Expansin C-terminal domain 152 235 IPR007117 -
Arst1g01792 251 Gene3D - 146 247 IPR036749 -
Arst1g01792 251 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Arst1g01792 251 Pfam Lytic transglycolase 64 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01792 Arst-Chr1 33466483 33468849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01792 5 251 Expansin Gene Family AT4G17030 60.714 2.25e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01792 - - gmx:100779487 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00586 5 4854177 4855950 Arst1g01792 1 33466483 33468849 PCT