Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01787 ATGCCCCAAGCAACAAATGGGGGCAACTCACGCATTGGAACCACGAACCCCCTCGACGAACTCCCAGACCCAAGAGGACCAAATCAAGGAAGGCGCAAGTATTTTGAATGTGCCAACCACGAGCCTCGGGCTTCACGGTTGACACGTTGGGGCACTGTTCCGCCCCATCCCACTAATGATCTGGGTTCGGTCATGAGTCACCGACTCGACGGGTCCACCGACCCAAACCAAGAGGTGACCCGCGCGTCACCTCACATTCCACAAGAAACCTGGACAGCTAGTGGAAGCTTCCAGGCAGGTGAGCCTGATCACAAGGGGCCCACCCGAGCATGGAGTATAAATGGGAGGGAACTACACCTCCCCAAAGGCCAAGGAAATTGGAGCGACGCTCAGCAACTCTTCCAGCGCGACGCCCAGACCATCACCCCGGAGGCTCTCGAGAGCGTGAAGGCCGCCATAGCCAGCAGCGACGTCGACCACAAGACCGACGCGAAGCGGAAGGCAGTTCCCCGCCGTGCCGCTGGGCAGACGTGGGAGGATCCCTCGCTGGCCGAGTGGCCGGAGAACGACCATCGCTTGTTCTGCGGCGATCTAGGGAACGAGGTGAACGACGACGTTTTGTCGAAGACGTTCACAAGATTCCCTTCGTTTAACATGGCGAGAGTTGTGAGGGACAAGCGATCAGGGAAGACCAAAGGGTACGGATTCGTGAGCTTTGCGGACCCTTCGGACCTCGCTGTGGCTCTGAAGGAGATGAACGGGAAGTACGTTGGGAACAGGCCAATCAAGCTATGCAAGAGCAAGTGGAAGGAGAGGACCGATTATGATGCTGTTGATAAGCAGAAGAAGCACTCCAAGAAGAAGTTGAAGTCTTCCTCCAAGGTTGGCGTGTTGCATTACTAA 903 0.5681 MPQATNGGNSRIGTTNPLDELPDPRGPNQGRRKYFECANHEPRASRLTRWGTVPPHPTNDLGSVMSHRLDGSTDPNQEVTRASPHIPQETWTASGSFQAGEPDHKGPTRAWSINGRELHLPKGQGNWSDAQQLFQRDAQTITPEALESVKAAIASSDVDHKTDAKRKAVPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKTFTRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAVDKQKKHSKKKLKSSSKVGVLHY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01787 300 MobiDBLite consensus disorder prediction 154 173 - -
Arst1g01787 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Arst1g01787 300 MobiDBLite consensus disorder prediction 1 34 - -
Arst1g01787 300 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 130 282 - -
Arst1g01787 300 SUPERFAMILY RNA-binding domain, RBD 174 271 IPR035979 GO:0003676
Arst1g01787 300 MobiDBLite consensus disorder prediction 65 97 - -
Arst1g01787 300 Gene3D - 135 287 IPR012677 -
Arst1g01787 300 MobiDBLite consensus disorder prediction 1 16 - -
Arst1g01787 300 MobiDBLite consensus disorder prediction 276 300 - -
Arst1g01787 300 FunFam RNA-binding protein 42 126 276 - -
Arst1g01787 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 263 IPR000504 GO:0003723
Arst1g01787 300 CDD RRM_RBM42 185 267 IPR034215 -
Arst1g01787 300 SMART rrm1_1 192 265 IPR000504 GO:0003723
Arst1g01787 300 MobiDBLite consensus disorder prediction 46 108 - -
Arst1g01787 300 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01787 Arst-Chr1 33320298 33323490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01787 141 271 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 1.56e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01787 K25079 - adu:107484659 607.446