Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01620 ATGTCGATGGCTGGTTTGGATTTAGGAACAGCATCACGCTTCGTTCAAAATCTTCACAGACCAGACTTACACCTTCAGCAACAACACCATTACCAAGATTCCCAAGAACAACAACAACACCACACACCAGATCGTGCACCTGCACCTCAGTTCTCCGGCGAAGAAGATGATACCAGCCAAGGCGGCGGAAGCGGAAGCGGCGGTGGAGGCGCTTTTGAGCTCGGCTCCGGCTCTGGAGGCCGGCGCCCCCGAGGCCGTCCGCCGGGCTCGAAGAACAAGCCGAAACCGCCAGTCATCATCACAAGAGAGAGTGCCAACACGCTAAGAGCTCACATCCTCGAAGTTGCGAGCGGCTCCGACGTCTTCGACAGCGTCGCTACCTACGCGCGGCGGCGCCAGCGCGGGATCTGCATCTTGAGCGGCAGCGGAACCGTGACCAATGTTACTATCCGGCAGCCAGCTGCGGCAGGCTCCGTTGTCACGCTCCAGGGAAGGTTCGAGATCCTGTCGCTCTCCGGCTCCTTCCTCCCGCCGCCTGCACCGCCCGGTGCCACCAGCCTCAGCATATACCTCGCTGGCGGCCAGGGACAGGTAGTCGGTGGAAACGTCGTCGGAGAGCTGATCGCGGCGGGGCCAGTGATCGTCATCGCCTCGTCGTTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACGAGGAGGAGCAGCTCCAGATTCAGGCTCCCGGAAGTGCGGCGGCTGGAAGTCAGGGCTCCGCGGGCGTCGGAAACAACGCTTTTCCAGATCCTTCTTCGGGTTTGCCGTTCTTCAATTTGCCGCTTGGTATGCAGAATAATAATGTTCAATTGCCTGTTGACGGTTACTCTTCAGGTCCACGCCCTCCGTATTAA 894 0.5738 MSMAGLDLGTASRFVQNLHRPDLHLQQQHHYQDSQEQQQHHTPDRAPAPQFSGEEDDTSQGGGSGSGGGGAFELGSGSGGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDSVATYARRRQRGICILSGSGTVTNVTIRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGNVVGELIAAGPVIVIASSFTXXXXXXXXXXLDEEEQLQIQAPGSAAAGSQGSAGVGNNAFPDPSSGLPFFNLPLGMQNNNVQLPVDGYSSGPRPPY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01620 297 CDD DUF296 109 192 IPR005175 -
Arst1g01620 297 FunFam AT-hook motif nuclear-localized protein 108 237 - -
Arst1g01620 297 ProSiteProfiles PPC domain profile profile. 105 244 IPR005175 -
Arst1g01620 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 221 IPR005175 -
Arst1g01620 297 Gene3D - 108 242 - -
Arst1g01620 297 MobiDBLite consensus disorder prediction 19 99 - -
Arst1g01620 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 223 - -
Arst1g01620 297 MobiDBLite consensus disorder prediction 243 260 - -
Arst1g01620 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 250 IPR014476 GO:0003680
Arst1g01620 297 MobiDBLite consensus disorder prediction 23 40 - -
Arst1g01620 297 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01620 Arst-Chr1 26177198 26178551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01620 3 297 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.192 1.64e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01620 - - pvu:PHAVU_003G230600g 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00656 5 5496872 5498153 Arst1g01620 1 26177198 26178551 PCT