Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01287 ATGAGCTTTCAGGACATTGAATCTGGCCGTCCCTTCGGTGGTTCGAGGCGTGGCCTCATCAATGGGAAGCAAGATCCTACACAAGCGGTGGCAGCCGGCATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGGCTCGTCAACACCCTTGGAACCCCCAAAGACACCCCCGAGCTCCGTGAGAAGCTCCACAAGACAAGGCTGCATATTGGGCAGTTGGTGAAGGATACATCAGCCAAGCTAAAGCAAGCTAGTGATATGGATCACCAAGTTGAAGTTAATCCAAGCAAGAAGATAGCAGATGCCAAACTCGCAAAAGATTTTCAGGCCGTACTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGAGAAACAGCGTATACTCCTTTTGTTCCACAAGCAGTTCTTCCTTCGAGCTATACAGCTAGTGAAGTAGATACCAGTTCTGATACGACACCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATCGGCGAGGTTAATGAGATTTTCAAAGATCTTGCTGTGCTCGTCCATGAGCAAGGAGCCATGATTGATGACATTGGCTCCAACATTGAGAACTCTCATGCTGCAACTGCACAAGCAAAATCTCAACTTGCCAAAGCTTCAAAAACCCAAAGATCAAATTCGTCTTTGACATGTTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTCATTATAGTTCTGGCCGCCTAG 825 0.4679 MSFQDIESGRPFGGSRRGLINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDMDHQVEVNPSKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDTSSDTTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01287 274 Pfam SNARE domain 218 269 IPR000727 -
Arst1g01287 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Arst1g01287 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Arst1g01287 274 FunFam Syntaxin-22 like 21 134 - -
Arst1g01287 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Arst1g01287 274 CDD SNARE_Qa 201 242 - -
Arst1g01287 274 PANTHER SYNTAXIN 27 266 IPR045242 -
Arst1g01287 274 Gene3D - 175 274 - -
Arst1g01287 274 MobiDBLite consensus disorder prediction 1 21 - -
Arst1g01287 274 SMART tSNARE_6 176 243 IPR000727 -
Arst1g01287 274 Gene3D - 21 134 - -
Arst1g01287 274 SMART SynN_4 16 128 IPR006011 GO:0016020
Arst1g01287 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Arst1g01287 274 FunFam Syntaxin-22 like 174 274 - -
Arst1g01287 274 CDD SynN 24 150 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01287 Arst-Chr1 12672591 12677142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01287 1 262 SNARE and Associated Proteins AT5G46860 80.153 2.15e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01287 - - gmx:547656 414.846