Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01142 ATGGGCTTCTTCCGCAATCTTGTTTTGAAGATCGCCTTCTCTTGGGACACAGATTTGACCTTGCTGCTGCTGCCGTCTGAGCCGCCGCCAGGGGAAGCCGCTGCCGTCGTTACCACCACAGCACAAGAGAATCCACCACAGCAAGGAAAGGAACGTGTTTCGTATTCTACTAATGAGCAAAGTTTCAGGGAGGTTTTTGGAAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGTACCGTGATTTTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCGGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGGGAATAATGGTTGAAAAACAACAATGA 357 0.4734 MGFFRNLVLKIAFSWDTDLTLLLLPSEPPPGEAAAVVTTTAQENPPQQGKERVSYSTNEQSFREVFGKYGDVVDARIIVYRDFGRSRGFGFITYSSVEEASSAIQALDGQGIMVEKQQ 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01142 118 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 113 IPR000504 GO:0003723
Arst1g01142 118 SUPERFAMILY RNA-binding domain, RBD 53 112 IPR035979 GO:0003676
Arst1g01142 118 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 118 IPR000504 GO:0003723
Arst1g01142 118 Gene3D - 40 118 IPR012677 -
Arst1g01142 118 SMART rrm1_1 52 115 IPR000504 GO:0003723
Arst1g01142 118 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 52 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01142 Arst-Chr1 11263396 11265570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01142 51 109 Eukaryotic Initiation Factors Gene Family AT3G16380 42.373 8.47e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01142 K12741 - adu:107478777 192.586