Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01078 ATGGACGTGGAGCTGCAGTTTTCTGCTGAAGTCGGCGAAAGTAGTGCATTTGGTGAAGTTCCTCGCACGTCGTTCCCACTGAGGAACGGGTGCGCGGTAACTTTGTATCAAGATGCTCATATTCCTGATGAGTGTGTGGAGAGAATGGAGAATCAGGTGCCGCAGAGATGCTGCTGGGAGGATATATTTGATGCAATCAAGAAAGCAGAGAAGTTTGTATACATTGCTGGCTGGTCTCTTGACACTGATACAAAACTGTTAAGGGATCCATCAAGGAGGACATTGCAAGAAAGAGAAACTACACTTGGTCAGCTGCTCGAGAGAAAAGCAGAGGATGGCCGTGTCAGGGTAGTACTGCTTCTTTGGAAGGATATAACAGATACTCGGTATGGTAGTGGTGGAAAAATGAAGGCTTGCGGTAGAAAAGCTTACAAGTATTTTCATAAGAAGACTCGTGTTCACTGTGTTTTATGCTCTCGTCCTCCTTTCTACTCAACATACTCACATCACCAGAAGATTGTGGTGGTGGACAGTGAGTTGCCCCTTGAAAACTCAGATAATAACAGAAAAAGAACAATAGTGAGTTTTATCGGCGGTTTGGATCTTAGCTATGGAAGATATGATACTCCTTCCCATTCACTTTTCAGGACTCTAAGAAATGAACACAAGGAAGATTTTCACCAACCGTGCTTTCCCGGCTCTTCAATAGAAAAAGGTGGTCCAAGGGAACCGTGGCATGACGTGCACTGTAAGCTTGAAGGCCCTATTGCAAAGGATGTTTACGACACCTTTGTGCAGAGATGTAAGAAGATAGGTAAAGAAGGCATTCTTGTTCCGGAGCAAGAGTTTGAAAATGTCATCGATCATTTGTACCAAGTGAAACCCCTTCAAGGTCATGGCATGTGGAACGTTCAATTATTCAGATCTATTGATGATAAAGCTACTTGTGGGTTACCAAACACTCCTGAAGGTGTTGCCGGAGCTGGTCTTGTTAGAAGGAACGGTAGAATCATAGATCGTAGCATTCAAGATGCCTATATTGATGCTATTAGGCGTGCAGAAAGATTCATTTATATTGAGAATCAGTATTTTGTAGGAAGTGGTTTTGACTGGAAAGATGATGATGGCAACAAAATTGATCACGTGAATTGTTTGAATCTCATTCCAAAGGAGATTTCACTTAAAATTGTTAGCAAGATTAAAGCTAAGCAAAACTTCACTGTGTATGTTGTGGTTCCAATGTGGCCAGAGCCTTGCCCATATGATTCTTATGTTAAGCGAATTTTGTATTACCAGAGGAGGACAATGGAGATGATGTACAGGGACATTACTCAAGCACTCAATAGGGAGAACAAAACTGAGGAAGATCTTAAAAGATATTTGTCTTTCTTTTGTCTTGGAAACCGAGAGAAGGAGGATGAGAGGAAAGAAGAGGAGGAGCAGAAGGCAGAGACCGATGATGATAAGGATGATGATGATGGTGATGATTATGATGATGATGACGAGGAAGAGGAAGATGAGGAGAAGGCAGAGACTGAGGACGAGGAGGAGATGGAGGATGAAAAGGAGGAGAAGAATAAAGATAATGATTACATGATGGCCCAAAATGCTAGGCGATTCATGATTTATGTGCATTCCAAGATGATGATAGTGGATGATAAATACATAATCATTGGATCTGCTAATATGAACGAGAGATCAATGAATGGTGGCAGAGACACCGAAATTGCTATGGGAGCTTATCAACCCGTTGTGACCGAGCATGGTGCTGCTGCTACTACAACTGCAAGGGGTGAGATCCATGGTTTTCGCAAATCACTTTGGTACGAGCACCTTAACGTGCGAGATGACAGATTCGACGACCCTGAAAGAGAAGATTGCATTACAATGGTGAACACACTTGCTCAAATAAATTGGAACATGTTTGCTAGGGTTTCAGATGCAACTGACCTTCCTGGTCACCTGCTCTGCTATCCTGTTAAAATTTCTGCCAATGATGGAACTGTCACAGAGCTTTCAGGATCTTTTCGTTTCTTTCCGGACACTAAGGCCCGTGTTCTACCTGGTAAAAGCCGTGGTAGACTGATAAATGAGAAGGTCTAG 2103 0.4275 MDVELQFSAEVGESSAFGEVPRTSFPLRNGCAVTLYQDAHIPDECVERMENQVPQRCCWEDIFDAIKKAEKFVYIAGWSLDTDTKLLRDPSRRTLQERETTLGQLLERKAEDGRVRVVLLLWKDITDTRYGSGGKMKACGRKAYKYFHKKTRVHCVLCSRPPFYSTYSHHQKIVVVDSELPLENSDNNRKRTIVSFIGGLDLSYGRYDTPSHSLFRTLRNEHKEDFHQPCFPGSSIEKGGPREPWHDVHCKLEGPIAKDVYDTFVQRCKKIGKEGILVPEQEFENVIDHLYQVKPLQGHGMWNVQLFRSIDDKATCGLPNTPEGVAGAGLVRRNGRIIDRSIQDAYIDAIRRAERFIYIENQYFVGSGFDWKDDDGNKIDHVNCLNLIPKEISLKIVSKIKAKQNFTVYVVVPMWPEPCPYDSYVKRILYYQRRTMEMMYRDITQALNRENKTEEDLKRYLSFFCLGNREKEDERKEEEEQKAETDDDKDDDDGDDYDDDDEEEEDEEKAETEDEEEMEDEKEEKNKDNDYMMAQNARRFMIYVHSKMMIVDDKYIIIGSANMNERSMNGGRDTEIAMGAYQPVVTEHGAAATTTARGEIHGFRKSLWYEHLNVRDDRFDDPEREDCITMVNTLAQINWNMFARVSDATDLPGHLLCYPVKISANDGTVTELSGSFRFFPDTKARVLPGKSRGRLINEKV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01078 700 SUPERFAMILY Phospholipase D/nuclease 340 625 - -
Arst1g01078 700 Pfam Phospholipase D C terminal 616 687 IPR024632 -
Arst1g01078 700 Coils Coil 468 489 - -
Arst1g01078 700 SUPERFAMILY Phospholipase D/nuclease 21 274 - -
Arst1g01078 700 Pfam Phospholipase D Active site motif 541 567 IPR001736 GO:0003824
Arst1g01078 700 Pfam Phospholipase D Active site motif 167 206 IPR001736 GO:0003824
Arst1g01078 700 Gene3D Endonuclease Chain A 308 597 - -
Arst1g01078 700 Coils Coil 501 528 - -
Arst1g01078 700 PANTHER PHOSPHOLIPASE D 15 684 IPR015679 -
Arst1g01078 700 SMART pld_4 165 206 IPR001736 GO:0003824
Arst1g01078 700 SMART pld_4 540 567 IPR001736 GO:0003824
Arst1g01078 700 Gene3D Endonuclease Chain A 42 285 - -
Arst1g01078 700 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 165 206 IPR001736 GO:0003824
Arst1g01078 700 MobiDBLite consensus disorder prediction 479 523 - -
Arst1g01078 700 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 540 567 IPR001736 GO:0003824
Arst1g01078 700 MobiDBLite consensus disorder prediction 471 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01078 Arst-Chr1 10797038 10799822 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01078 13 691 Phospholipase D Gene Family (Wang group) AT1G52570 51.580 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01078 K01115 - sind:105158388 627.091