Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01003 ATGAGTTCCTTCTCCATCACACGGAAAAAGACACCATTTCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCTGAAGATGAGACTGCTCGTTTGTATGCCGAATTTGTAGAGTCATTTCAAGGTGATACCACTCCTGGGTCAAAGGCTTTTGTACGAGGAGGAACAATTAATCCCAATGATAAATTGAAGGATGATACTGAGGGTGAAAAGTCCAAAGATGGGGTTTCTGGTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCACCTCCAATGGCAACCAAGGGGAAAGAATCGGAAAGGAAAAAAGAGGAGGAAAAACCTAAGGACAAAGAGAAAGGAAAGTCGAGGAACATTGATCATTTCATGGAGGAGCTAAAGCACGAGCAAGAGATGAGGGAGAGGCGGAACCAAGAACGTGAACATTGGCGTGATGGGCGCGGAGAACATTCCACTTCAAGTCGCTTTGACGAACTACCTGATGACTTTGATCCAAGTGGAAGACTTCCTGGATCATTTGATGATGGCGATCCCCAAACTACGAATCTGTATGTTGGAAACCTCTCACCCAAGGTTGATGAAAATTTTCTGCTCCGTACTTTTGGAAGATTTGGACCTATTGCCAGTGTGAAGATAATGTGGCCTAGGACAGAAGAGGAGCGAAGACGACAAAGAAACTGTGGCTTTGTGGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGGTGGGGAAAGTCTGTTGCGCTCCCATCGCAAGCCCTACCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTTATCCTATCTGGTCCATCAGGCGGTCCACCTGTGACTTCTGTGCCTAATCAGAACTCTGAACTGGTCCTTACTCCTAATATTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTGAGGCATGTAATTGATACAATGGCTTTATATGTTCTGGATGGAGGGTGTGCTTTTGAACAAGCTATCATGGAGAGGGGTCGTGGAAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACACACCTACTATGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATACCCCCCTCATTACCAACAGCAAAAAGTCCAGAACATGAGAAGGAGTCTGGTCCAACACATGCAGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGACGAGTTTGAGGATATGCTGCGGGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCCATGGGGTTTTCTTTGGATAATGCCGATGCAGCTGGCGAGATTGTTGAAGTTTTAACAGAATCATTGACGCTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTCATGCTTGTATCTGATATTCTTCACAATAGTAGTGCTCCTGTAAGAAACGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCTGACGTAATGGAGAGTTTTAATGACTTATATCGTAGCATAATGGGGCGCATTACTGCTGAAGCACTGAAAGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTCCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTTCTTCGACCTGGGAACTCCGGTGTTATACCATTCCATTCCATATGTGGTGATGCTCCTGAGATCGAACAGAAGGCCACTTCTGAAGATACGGTTGGCGGCAAGGCCAACCAAGATGCTGCATTGGCAATGGGCCGAGGAGCTGCAACAAGGGAGCTAATGAGTTTGCCTCTTGCCGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGCAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTGGATGACGAATTGAAATATGCTCAAAACCAAGCAAATGCAGGGAAGTATACAAGTACTCGGCGGGAAACGAGTGCTGAGCCTGAACCAGCGGGATTATCTGGATGGAACCACTATTCAGATGAAGATTTGCCTTCACAAGGCAAAGGGTCTTCACCTTTAGCATCAACCCTTTCTATTCCACAGCCTGAACTTAAAGCCTTTACAAAAAAGGAGAAGAATGATCCAGTTTTGCCTGCCTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGACGAGCATAGGAGGGATGGAAAGAATCTTGGGCTAAGCTACTCGTCTTCTGGTAGCGAGAATGTTGGAGACGGTCTTAGTAAAGCTGATGAACACGAGTCTGCTGCAGATACAAGTTTTTCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTACGACGCTTGGAGGTTGCTCTAATTGAATATCGGGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTGAAGCACACCGGAAACGGCTGCAATCAGAGTATGGTTTATCAGATTCTGGCGAAGATGGTCAAGGCAATATTCGACAGTGATAGAGGAAGGGACCGGCACCGCGAAAAGAGTGGAAGCCGAGAGAGGGATGATCATGACAGGGAAAGGAGCAGGGACAGAGATAGGGACCGGGACCGGAGAAGACGGGCCAAATAA 2761 0.4596 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNDKLKDDTEGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRGEHSTSSRFDELPDDFDPSGRLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGGPPVTSVPNQNSELVLTPNIPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGPTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKATSEDTVGGKANQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQANAGKYTSTRRETSAEPEPAGLSGWNHYSDEDLPSQGKGSSPLASTLSIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEHRRDGKNLGLSYSSSGSENVGDGLSKADEHESAADTSFSAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVEAHRKRLQSEYGLSDSGEDGQGNRRTSSERRDRHDVSRKRHRSPSPSHSPHQRLSSRDRDREHDFDRERDRQRDRSHDFDSDRGRDRHREKSGSRERDDHDRERSRDRDRDRDRRRRAK 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01003 974 SMART 558neu5 450 585 IPR006569 -
Arst1g01003 974 MobiDBLite consensus disorder prediction 99 168 - -
Arst1g01003 974 Gene3D - 818 869 - -
Arst1g01003 974 SMART rrm1_1 186 262 IPR000504 GO:0003723
Arst1g01003 974 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Arst1g01003 974 MobiDBLite consensus disorder prediction 907 974 - -
Arst1g01003 974 MobiDBLite consensus disorder prediction 11 35 - -
Arst1g01003 974 MobiDBLite consensus disorder prediction 417 444 - -
Arst1g01003 974 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Arst1g01003 974 Coils Coil 819 839 - -
Arst1g01003 974 CDD cwf21_RRC1-like 818 867 IPR047491 -
Arst1g01003 974 MobiDBLite consensus disorder prediction 1 186 - -
Arst1g01003 974 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Arst1g01003 974 Coils Coil 841 865 - -
Arst1g01003 974 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Arst1g01003 974 Coils Coil 448 468 - -
Arst1g01003 974 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Arst1g01003 974 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Arst1g01003 974 MobiDBLite consensus disorder prediction 745 779 - -
Arst1g01003 974 MobiDBLite consensus disorder prediction 719 742 - -
Arst1g01003 974 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 266 IPR000504 GO:0003723
Arst1g01003 974 PANTHER RNA PROCESSING PROTEIN LD23810P 1 904 - -
Arst1g01003 974 Coils Coil 17 37 - -
Arst1g01003 974 MobiDBLite consensus disorder prediction 61 80 - -
Arst1g01003 974 ProSiteProfiles SAP motif profile. 636 670 IPR003034 -
Arst1g01003 974 MobiDBLite consensus disorder prediction 862 974 - -
Arst1g01003 974 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Arst1g01003 974 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 259 IPR000504 GO:0003723
Arst1g01003 974 Gene3D - 443 589 IPR008942 -
Arst1g01003 974 SUPERFAMILY RNA-binding domain, RBD 178 273 IPR035979 GO:0003676
Arst1g01003 974 MobiDBLite consensus disorder prediction 410 444 - -
Arst1g01003 974 MobiDBLite consensus disorder prediction 691 823 - -
Arst1g01003 974 Gene3D - 96 268 IPR012677 -
Arst1g01003 974 Pfam cwf21 domain 819 865 IPR013170 -
Arst1g01003 974 Pfam CID domain 450 578 IPR006569 -
Arst1g01003 974 CDD RRM_SR140 184 267 IPR035009 -
Arst1g01003 974 SMART cwf21_2 818 867 IPR013170 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01003 168 262 Eukaryotic Initiation Factors Gene Family AT1G22760 31.579 1.83e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01003 K12842 - gmx:100776093 1644.4