Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00893 ATGTTTCCCTTCTTGTTCGAACCCCAAAGCGACGAAGAGATCGAACACTCCGAAGAAGAAGAAGCATCCGAACCAGAATCAGAACCAGGATCCGAACCGGAAGAATCAGAAGGAGAAGAAGAAGAAGACGAACAAGAAGCTTCTAGAATCTCAAAGGAGAAGAAGAAGAAGAAAACACAGTCTCCGTGGGACTTCGCCAAGTACACTGAGTCAGTTGCGGAGGAGCACGCTCGCCGGAGTACAACCTCCGTTGACGAAAAAATCTCCAAAGCATTAAAACAGCGCTCAACACCTCTCGCGGTTCCTTCGCAAAACAACGACGTTGACGACTCATCAGATTCCGAACCTGATAAACAGGAAGATTATAGACCAGATGAAGAAGATGAAGAGGAGGGCAATGCGGCTGATAGCAAGTCCTTTTTCGCTCCTTCTGATGGAGCATCTTTCCATGCGGATTCGTTCTTGCAGCTTCATTTGTCACGGCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCTTGTATACCATTGGCGTTAAATGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGAAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTGTTGTTCCGTCCTAAACGCATGCATGCAATAAGGGTCCTTATTCTTACACCAACCAGAGAGTTAGCAGTACAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGATATTAGATGTTGCCTGGTTGTTGGGGGTTTGTCAACGAAGGTGCAAGAAGCTGCTTTGAGATCAATGCCAGACATTGTCGTTGCTACCCCAGGACGTATGATAGACCATTTACGTAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTGCTAATCCTTGATGAGGCGGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACAATGCTATTTTCAGCAACAATGACTGAGGAGGTTGATGACCTTATTAAATTGTCCCTAACAAAACCTGTGCGTCTTTCTGCTGATCCATCTCCATCCACTTCTGTACTCTATACTATGGTAGTTGGCTCTATATGTCATATTCATGCTCCTGTGGAATATATTCTTTTCCCCCTAATACTGATTATGCAAATTATCAATTTATCATGTGAAACTCATTTCAAGGTGGTTAGGATACGAAGATTGCGTGAAGCAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTTATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTCTGAAAGCTGCTGAACTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAATTCAGGAAGCAAGAAGTTGACTTTTTGATTGCAACTGATGTGGCTGCCCGTGGCCTTGACATCATAGGTGTTCAAACAGTTATCAACTATGCATGTCCTCGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGCCGAGAAGGATGCGCCGTCACATTTGTGACTGATAACGACCGGTCACTTCTAAAAGCAATTGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGAATTGTAGCAGAACAATCCATACATAAATGGTCTCATATAATTGAGCAATTGGAGGATCAAATTGCAGAAGTACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACTTGATTGCTCATAAGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTAACAGAGACAGAAAAGAAGGTTGCTGCAAAAGCAGCAAAGGTAAAATTTCTTGTTATTGTTAATAACGACAAGAGTTCTGGAAAGGTAATAAGTGCTCAGGAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCGAGAAAGAAGCGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAAGATGAAGGAGATGATGACAAACCAGAAGCTAAGGGGGCAAATAAGAAAGAAAAGGGTGGACTTTCACTTGTTGATGTCGCTTATCGACGAGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAATGGATTCAGGCAAGATCGTGAAGAAGAACAAAAAGAATACCAATCGTCCTTCACATAAGTCGTCTTCAAGGACACAGGAGATGCAGGAGCTATTCCAGGCTGACATGAAGGACAAAAAGCCGAAAAGAAGAGGTGCTGGAGCAGGAAAAAAATCTAAGAGTTCGTTCAAGAGCAAGTCAAGGTACAAGCGCAGGTAG 2385 0.4377 MFPFLFEPQSDEEIEHSEEEEASEPESEPGSEPEESEGEEEEDEQEASRISKEKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLAVPSQNNDVDDSSDSEPDKQEDYRPDEEDEEEGNAADSKSFFAPSDGASFHADSFLQLHLSRPLLRACEALGYAKPTPIQAACIPLALNGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDDLIKLSLTKPVRLSADPSPSTSVLYTMVVGSICHIHAPVEYILFPLILIMQIINLSCETHFKVVRIRRLREANQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQLEDQIAEVLEEEREERALRKAEMEATKAENLIAHKEEIFSRPKRTWFVTETEKKVAAKAAKVKFLVIVNNDKSSGKVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEGDDDKPEAKGANKKEKGGLSLVDVAYRRAKAVKAVKKAMDSGKIVKKNKKNTNRPSHKSSSRTQEMQELFQADMKDKKPKRRGAGAGKKSKSSFKSKSRYKRR 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00893 794 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 357 IPR014001 -
Arst1g00893 794 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 62 367 - -
Arst1g00893 794 Pfam Helicase conserved C-terminal domain 423 526 IPR001650 -
Arst1g00893 794 Coils Coil 564 611 - -
Arst1g00893 794 Gene3D - 98 359 IPR027417 -
Arst1g00893 794 MobiDBLite consensus disorder prediction 720 738 - -
Arst1g00893 794 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Arst1g00893 794 Coils Coil 653 673 - -
Arst1g00893 794 CDD SF2_C_DEAD 419 535 - -
Arst1g00893 794 SMART helicmild6 441 526 IPR001650 -
Arst1g00893 794 MobiDBLite consensus disorder prediction 12 44 - -
Arst1g00893 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 546 IPR027417 -
Arst1g00893 794 MobiDBLite consensus disorder prediction 45 92 - -
Arst1g00893 794 SMART ultradead3 171 370 IPR014001 -
Arst1g00893 794 Pfam DEAD/DEAH box helicase 176 346 IPR011545 GO:0003676|GO:0005524
Arst1g00893 794 MobiDBLite consensus disorder prediction 772 794 - -
Arst1g00893 794 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Arst1g00893 794 MobiDBLite consensus disorder prediction 1 141 - -
Arst1g00893 794 Gene3D - 410 636 IPR027417 -
Arst1g00893 794 MobiDBLite consensus disorder prediction 657 794 - -
Arst1g00893 794 CDD DEADc_DDX27 163 358 - -
Arst1g00893 794 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 421 565 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00893 Arst-Chr1 9037731 9044164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00893 140 543 Eukaryotic Initiation Factors Gene Family AT3G13920 29.703 7.48e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00893 K13181 - gmx:100791233 1008.82