Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00849 ATGGAGACACAATACAGGGATTCTTTGTCCTCCCATGGTGTTGCAGGCTCATTTAAGACTTCTTCACTTAATGTTCCGAAAAAGGTGGAAAGCAATGCTTGGGGAATACCGCACAAGAGTAATGTACTTCATGCTTCTAATGATGTTAGCTTGTTTTCCAGCTCACTACCTGTTCTTCCACATGAGAAGTTAAATTTGACTGATTCTGAACGTTATGGCCAACCTATTGATGATCACTTGCTAACGATAGATAAAGTGGACAAAGAGAATGAGGAAAATGATCCTTTTGAAGATTTTGAAGCCAATGTAGTTGGAAACATACTTCCTGATGAAGAGGAGCTTTTAGCTGGGATAATGGACGATTTCGACCTTAGTAGGTTGCCAAGCCAAGTGGAGGATCTGGATGACAATGATTTGTTTGGCAGTGGAGGGGGGTTCGAAATGGACTTTGAACCCCAAGAGAGTCTTAATGTTGGCATGTCAAAGCTAAGCGTTTCAGATGGAGTTGCTTCAAATGGTTTTGGTCATTATTCAATCCCAAATGGTATGGGAACGGTGGCTGGTGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTACGGACCTTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGACATTCGAGATGCTCGCACTGCAATGCGTGCCTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCAGAGAAAGATATTAATCAAGGAACCCTTGTAGCATTCAATTTGGATCCTTCAGTGTCAAATGAGGACCTTCGATTAATCTTTGGTGCTTATGGAGAGGTCAAGGAGATTAGGGAAACACCGCATAAGAGGCACCATAAATTTATTGAGTTTTATGATGTTAGAGCGGCAGAAGCAGCTCTTAAAGCATTAAATCGAAGGGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGCGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAGTTGGAGCAAGATGAAGCTCGAACTTTTAGACATCAAGTAGGTTCACCTGTGGCCAATTCTCCTCCCGGTAACTGGGCACATTTTGGTAGTCCAGTTGAGCATAATCAACTAGGTTCATTTAGCAAGTCGCCTGGTTTGGGCCATGCCAGCCCTGTCAATACTAACCATTTTTCTGGATTGGCTGCAATTCTTTCCCCACATGCATCTAACAAGATTGCGCCGATTGGTAAGGACCCTGGAAGGGCTGCAAATCAGATATTTGTGAACTCTGGATCAATGCAAGGAACAGCTTTTCAGCATTCCATGTCTTTCCCTGAGCAAAAAGTGAATGCAAGTCCTAGGCCTATATCTTCCTTTGGCGAATCAAGTTCAAGCTCATCAAGTATTGGAACATTGTCTGGCCCTCAATTTCTTTGGGGGAGCCCAACTCTTTATACTGAGCATTCAACCACATCTGGTTGGTCTTCGTCTTCTTTGGGGCATCCATTTACTTCTAGTGGCCAAAGGCAGGGTTTTCCATATTCAAGTCATCGCAGTTCTTTTCTTGGTTCCCAGCCCCATCATCATATAGGATCTGCTCCATCTGGCCTTCATTTTGATAGGCATTTTAACTACTTCCCAGAATCACCCGATGCTTCTTTAATGAGCCCAGTTGGATTTGGGAATTTAAATCTCAGTGACAGGAGTTTTATGATGAACAGGAGCAGTCATGCATCTTTAGGTGGTTCTGCTGGCCTTTCAGGAAATACTGCTGAAAATGGTTCACCTAATTTCGGGGTGCTGTCACTGCCTAGGCATGGTTCTTTGCTTCTCGGAAGCAGTTCTTATTCTGGACCAGGAGCAACTAACACTGAAGGCTTGTCTCGAAGTAGGCGACCCGAGAATAGTGGAAACCCAATTGATTCAAAGAAGCTGTACCAACTTGATCTTGATAAAATCCTCAGTGGTGAAGATACAAGGACGACTTTAATGATTAAAAATATTCCTAACAAGTACACATCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTGCTTATGACTTTCTCTACTTGCCAATTGATTTTAAGAACAAGTGTAATGTGGGTTATGCCTTTATCAATATGGTGTCTCCTTCACACATCATTCCATTCTATGAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGCGAAAAAGTTGCCTCACTGGCGTATGCAAGGATACAAGGAAAGGCTGCACTTGTGACACATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTCGGCCAATTCTCTTTCATTCGGAGGGCCAAGAGACGAATGATCAGGAGAATTTTCTATCCAGCAATTTGAATATATGTATTCGTCAACCAGACGGGTCTTACTCGGGTGATTTATTGGAGAGCCCAAAGGGGGATTGGGACGAGAAAATAGAAAAAGATTAA 2553 0.4254 METQYRDSLSSHGVAGSFKTSSLNVPKKVESNAWGIPHKSNVLHASNDVSLFSSSLPVLPHEKLNLTDSERYGQPIDDHLLTIDKVDKENEENDPFEDFEANVVGNILPDEEELLAGIMDDFDLSRLPSQVEDLDDNDLFGSGGGFEMDFEPQESLNVGMSKLSVSDGVASNGFGHYSIPNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVAFNLDPSVSNEDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGNWAHFGSPVEHNQLGSFSKSPGLGHASPVNTNHFSGLAAILSPHASNKIAPIGKDPGRAANQIFVNSGSMQGTAFQHSMSFPEQKVNASPRPISSFGESSSSSSSIGTLSGPQFLWGSPTLYTEHSTTSGWSSSSLGHPFTSSGQRQGFPYSSHRSSFLGSQPHHHIGSAPSGLHFDRHFNYFPESPDASLMSPVGFGNLNLSDRSFMMNRSSHASLGGSAGLSGNTAENGSPNFGVLSLPRHGSLLLGSSSYSGPGATNTEGLSRSRRPENSGNPIDSKKLYQLDLDKILSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGAYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETNDQENFLSSNLNICIRQPDGSYSGDLLESPKGDWDEKIEKD 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00849 850 Gene3D - 282 380 IPR012677 -
Arst1g00849 850 SUPERFAMILY RNA-binding domain, RBD 692 777 IPR035979 GO:0003676
Arst1g00849 850 MobiDBLite consensus disorder prediction 526 556 - -
Arst1g00849 850 FunFam MEI2-like protein 5 isoform 2 187 281 - -
Arst1g00849 850 MobiDBLite consensus disorder prediction 642 672 - -
Arst1g00849 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Arst1g00849 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 350 IPR000504 GO:0003723
Arst1g00849 850 MobiDBLite consensus disorder prediction 472 498 - -
Arst1g00849 850 MobiDBLite consensus disorder prediction 642 665 - -
Arst1g00849 850 MobiDBLite consensus disorder prediction 526 564 - -
Arst1g00849 850 CDD RRM3_MEI2_like 693 778 IPR034454 -
Arst1g00849 850 PANTHER RNA RECOGNITION MOTIF-CONTAINING 33 808 - -
Arst1g00849 850 CDD RRM2_MEI2_like 282 352 - -
Arst1g00849 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Arst1g00849 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Arst1g00849 850 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Arst1g00849 850 FunFam Protein MEI2-like 1 282 377 - -
Arst1g00849 850 CDD RRM1_MEI2_like 197 273 IPR034453 -
Arst1g00849 850 SMART rrm1_1 199 267 IPR000504 GO:0003723
Arst1g00849 850 SMART rrm1_1 284 352 IPR000504 GO:0003723
Arst1g00849 850 SMART rrm1_1 692 768 IPR000504 GO:0003723
Arst1g00849 850 Gene3D - 186 281 IPR012677 -
Arst1g00849 850 Pfam RNA recognition motif 2 690 786 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00849 Arst-Chr1 8644796 8652396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00849 195 349 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 8.79e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00849 - - gmx:100814765 1360.13