Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00752 ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACCACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTTTCACTCCAACGGCACCAATGGAACCAATGGAATCAATGGCAACGCCAACAACCACAATTCCGTGTCCCATGGTTCTCGCCGCTCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAACCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATTGCTGTTGCAACCCCTGGAAGATTTATTGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAAGCAGATAGAATGCTTGATATGGGTTTTGAGCTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGACGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAGGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGGTAGGCGCAGCTGATAGTGCTTGGGATGATTAG 1797 0.448 MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHFHSNGTNGTNGINGNANNHNSVSHGSRRSTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMVLSLSLSLSLSLKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQGEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00752 598 Pfam Helicase conserved C-terminal domain 384 501 IPR001650 -
Arst1g00752 598 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 140 553 - -
Arst1g00752 598 SMART helicmild6 420 501 IPR001650 -
Arst1g00752 598 MobiDBLite consensus disorder prediction 1 93 - -
Arst1g00752 598 CDD DEADc 173 361 - -
Arst1g00752 598 SMART ultradead3 172 375 IPR014001 -
Arst1g00752 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 360 IPR014001 -
Arst1g00752 598 Coils Coil 239 259 - -
Arst1g00752 598 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Arst1g00752 598 Coils Coil 542 562 - -
Arst1g00752 598 CDD SF2_C_DEAD 372 510 - -
Arst1g00752 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 542 IPR001650 -
Arst1g00752 598 Gene3D - 108 364 IPR027417 -
Arst1g00752 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Arst1g00752 598 Gene3D - 366 560 IPR027417 -
Arst1g00752 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 521 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00752 Arst-Chr1 7656123 7664022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00752 148 523 Eukaryotic Initiation Factors Gene Family AT1G72730 34.737 1.27e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00752 K12823 - gmx:100787545 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00752 1 7656123 7664022 Arst1g00752 1 7656123 7664022 ECH