Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00727 ATGGCTAGAAAGAAAGTGGAGTTTAAATACATAGCAAATGACTCAAAGAGGAGGGCAACACAAAAGAAAAGGAAAAGTGGTCTGATAAAAAAGGTTGATGAGATTAGCACTCTTTGCGGAGTTGATGCTTGTGCTATAATTTATACCCCTGATGAACCACGGCCAGAGGTATGGCCGTCGCCATTAGGAGTGAACCGAGTGATCTCTAGATTTAAGGAAATGCCTGTATTAGAACAAAGTAAAAAAATGATGTCTCAAGAGAGCTTCTTGAGACAAAGGATCCAGAAAGGCCAAGATCAACTAAAGAAACTAAAAAATGAGAATAGAAAGAAAGAGATGAACAATCTCATGTTTCAATCCTTAGGTGGCTACCAATCCCTTGACAATGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAAGTCAACAAGCAAATTAGCAAGCTTCAAGGGCAAGAAGGGACTAGTTGTAATAATAATAGAGTAGCAACCATCAATGATGAGCAAGCTCAAGTGGACAATATCATCAACAGTGGTGTGTTTCCATTTGTGGATGCTGCTAATAATTTCCAAAATGATTATGGCCCAACTCCATTTAATCCTTGA 627 0.3844 MARKKVEFKYIANDSKRRATQKKRKSGLIKKVDEISTLCGVDACAIIYTPDEPRPEVWPSPLGVNRVISRFKEMPVLEQSKKMMSQESFLRQRIQKGQDQLKKLKNENRKKEMNNLMFQSLGGYQSLDNATMIDLNDLAWIIDQNIKEVNKQISKLQGQEGTSCNNNRVATINDEQAQVDNIINSGVFPFVDAANNFQNDYGPTPFNP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00727 208 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Arst1g00727 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst1g00727 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Arst1g00727 208 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Arst1g00727 208 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Arst1g00727 208 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Arst1g00727 208 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Arst1g00727 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst1g00727 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst1g00727 208 Coils Coil 87 114 - -
Arst1g00727 208 PANTHER MADS BOX PROTEIN 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00727 Arst-Chr1 7287385 7288011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00727 1 157 Type I MADS-box Gene Family AT5G48670 51.592 1.67e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst1g00727 SRF-TF 7.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00727 - - aip:107644294 364.385