Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00560 ATGGGAAAGTGCTCCTTTCAGGATTCCCTCAAAACTTTGGAAGCTGATATTCAGTATGCTAATACACTGGCATTAAGTAATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGACTATCATACAGTCCAGCAGCCCCCATTTTTCTGTTTCTTGTTCAGTGGGCAGATTTTCGCCTTGCTGCTGCTCTTGGTCTCCTCAGAATCCTAATTTACGTGAACTGTGGAAGTGGGAAGAATACCATGTCAATATTTGAAAGGAAAGCAAGTATTAGGCAATTTTACTCTGTGATATTCCCTGCTTTATTGCAACTCCAGAAAGGGATCACGGATTTGGAGGAAAGAAAACAGAAGGAAATGTATTTGCTTAGGTACCAAAGTAAAAGTGATTTTGAAGAGAAAGGAGGAGAATATGAAATTGACAATGAAAGAGAAGAGGAATGTGGTGTTTGCTTGGAGGTGAAAGGGAAAGTTGTGCTGCCTAATTGCTGCCACACTATGTGTTTGAATTGCTACAGATCTTGGTGCGTGAGGTCTGAGTCTTGCCCCTTCTGTAGGGATAGCCTAAAGAGAATGGACTCTGGTGACCTTTGGATTTACACAGACAAGAGTGACATTGTTGATCTTGGCACAATTTACAGAGAGAATTCCAAGATGCTATTTCTGTATATAGAGAAGTTGCCCCTTGTAATTCCTGACCCAAGACATGTATCCTATGATCCATTCCTAAGGTGA 735 0.4122 MGKCSFQDSLKTLEADIQYANTLALSNPRDKDGGCYQMRLSYSPAAPIFLFLVQWADFRLAAALGLLRILIYVNCGSGKNTMSIFERKASIRQFYSVIFPALLQLQKGITDLEERKQKEMYLLRYQSKSDFEEKGGEYEIDNEREEECGVCLEVKGKVVLPNCCHTMCLNCYRSWCVRSESCPFCRDSLKRMDSGDLWIYTDKSDIVDLGTIYRENSKMLFLYIEKLPLVIPDPRHVSYDPFLR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00560 244 SMART ring_2 148 185 IPR001841 -
Arst1g00560 244 PANTHER RING FINGER PROTEIN 41, 151 4 236 - -
Arst1g00560 244 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Arst1g00560 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 195 IPR013083 -
Arst1g00560 244 FunFam RING/U-box superfamily protein 129 195 - -
Arst1g00560 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Arst1g00560 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Arst1g00560 244 SUPERFAMILY RING/U-box 147 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00560 Arst-Chr1 5421502 5424141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00560 60 217 C3H Transcription Factor Family AT1G04360 25.153 1.96e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00560 - - gmx:100808567 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00560 1 5421502 5424141 Arst1g00560 1 5421502 5424141 ECH