Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00549 ATGAATGGTAATAGTAGTAGTAATAGTGTTCATCATGAAAATGATGTTATTCCATTTCTTCATCATGAGTATGGTGGTAATAACAATAAGGTTACTACTACTAATAATAATTCTATGTGTCGGTTAGGGCTTCCTTTAACAGCCATAGATAGGTTCTTATGTAGCCAACAACAAAGTCAAGTCCTTCACAATGATGATAGTGTTTTTGATGAAGATTTTCTTCAAACTAGGTTTTCTAATTGTTATTATGGTGGTGGTTCAAATAACCCTTATTATAAGCTTGTGTGGCCTAATTGCACTACTCAAGAAGCAAGCATTGTTGTTCATCATGATAATAATCAACAAGAGGGTTTCAATAATTGGCTACAACAAATTCCCACATTGTGTCACAATCAAGAAGATGTTCATCAAGCTTTAGGGAAAACTAATGTCAAAGTTGTGGGAAGAAACCCTAAAAAAGCTTCTTCTTCTTCTTCTGTTTCCTTGATCAAAGGACAATGGACTCCTGAAGAAGACAGGAAATTGGAGAAGCTGGTGAAACAACATGGAACAAGGAAGTGGTCACAAATAGCTGAAAAATTGGAGGGAAGGGCTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGACCAGATATTAAGAAAGACGGTTGGAGTGAAGAAGAAGAGAGGATATTGGTGGAAACTCATGCCAAGGTTGGAAATCGTTGGGCAGAAATCGCGAAGCATATACCAGGGCGAACTGAAAACTCAATCAAGAACCATTGGAACGCAACAAAGAGAAGGCAGAACTCAAGGAGAAAGAACAGGAAGCCATCATCATCAACCAACTCAAACAATAATGGCAAACCACAATCTTCAATTCTCCAAGACTACATTAGAAGCCAAACCCTAATTGGTACCAATAATATCAATGCTCCTATTACCACTACTAACTCAACCCCAACTATTACTAGTGAATCTGAATGTGATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAATTGTCAATGGAGATGGTGTTGGTAAGAACCCTAGTGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATAATTATTATTATCTTTCAAATCCATGGAACATGCACAACCCTACCACCAATAATAATAATAATGGTTACCTTGATTCTGATCTCTATATCTCTCAATTGATGAACAATGGAGTTTCAACAACAAGTTCATCATCATCACTTCATGAGGCTTATGAGAAGAATCAAAACATGGATTTTCATTGTTCAGCTGTGAAGAAAAGTGAGATGGATCTGTTAGAGTTTGTTTCCACTCATCATCAATTTTAA 1389 0.3629 MNGNSSSNSVHHENDVIPFLHHEYGGNNNKVTTTNNNSMCRLGLPLTAIDRFLCSQQQSQVLHNDDSVFDEDFLQTRFSNCYYGGGSNNPYYKLVWPNCTTQEASIVVHHDNNQQEGFNNWLQQIPTLCHNQEDVHQALGKTNVKVVGRNPKKASSSSSVSLIKGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKVGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNRKPSSSTNSNNNGKPQSSILQDYIRSQTLIGTNNINAPITTTNSTPTITSESECDNNNPYYSSPTIIAESYDDELLFMQQLFKENNQIVNGDGVGKNPSDECGDGFVHYSNNYYYLSNPWNMHNPTTNNNNNGYLDSDLYISQLMNNGVSTTSSSSSLHEAYEKNQNMDFHCSAVKKSEMDLLEFVSTHHQF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00549 462 Gene3D - 163 215 - -
Arst1g00549 462 ProSiteProfiles Myb-like domain profile. 159 210 IPR001005 -
Arst1g00549 462 PANTHER MYB PROTEIN-RELATED 155 286 - -
Arst1g00549 462 ProSiteProfiles Myb-like domain profile. 211 261 IPR001005 -
Arst1g00549 462 Gene3D - 217 289 - -
Arst1g00549 462 SUPERFAMILY Homeodomain-like 161 257 IPR009057 -
Arst1g00549 462 CDD SANT 167 210 IPR001005 -
Arst1g00549 462 ProSiteProfiles SANT domain profile. 214 265 IPR017884 -
Arst1g00549 462 FunFam Transcriptional activator Myb isoform A 163 216 - -
Arst1g00549 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 214 IPR017930 -
Arst1g00549 462 MobiDBLite consensus disorder prediction 305 326 - -
Arst1g00549 462 MobiDBLite consensus disorder prediction 245 287 - -
Arst1g00549 462 SMART sant 215 263 IPR001005 -
Arst1g00549 462 SMART sant 163 212 IPR001005 -
Arst1g00549 462 MobiDBLite consensus disorder prediction 271 287 - -
Arst1g00549 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 215 265 IPR017930 -
Arst1g00549 462 CDD SANT 219 261 IPR001005 -
Arst1g00549 462 Pfam Myb-like DNA-binding domain 167 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00549 Arst-Chr1 5194814 5197385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00549 45 457 MYB Transcription Factor Family AT5G58850 38.964 1.83e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst1g00549 Myb_DNA-bind_6 5.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00549 K09422 - gmx:100786295 302.753