Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00516 ATGTCTTACTCGAGGAGATCAAGGTATTCTCCTTCTCCTTCCCCATCCCCATACAAGGGGTACAGCAGGTACAGCAGGTCCTTATCCAGGTCTCTTTCAAGGTCAAGATCAAGATCGAGAAGCCATTCAAGGAGCGTCTCAAGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAACGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATCACAGTGGAGAAGGCCAGAAGGCGACGTGGCCGAACCCCAACGCCTGGAAGATATCTCGGGCTAAGGACTATTCGAGCACGCCGTCGCTCACGCTCCCCAAGCTACTCTTCTAGGCGCTCTCCTAGCTATTCCCCCTACCGAAGAAGCTATAGTCGTTCGCCATATTCTCCGGATCGTAGTAGGAGTCCCTCTTATTCTCCTGACTATCGCCGTAGAAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGCCGCAGGTCCCCATATTCTCCATATTATAGTCGTCGCAGGTCGTATTCGCGATATGATCGTTACGAGCGGCGGAGGTCATATTCGCGGTCTCAATCCCCATACAGCAGGTCACCTGTCAGTTATCGTGACAGATCATACTCTCCCTATGACTCAAGGTATGACTCGCCTGATGATCGCTATTACAGAAGGCACCACAACAGGTCAGTTTCTCCAAGTGTCTCCCCTCCCCCAAGGCGAAGGTCGAGGAGAAGCTACTCGCGGAGTGTCACTCCTGTTCGAATGAGGAGCTGCTCTCGAAGCATCTCTCCCCGACGCAGCAGGAGGAGCTACTCACGAAGTGTTTCTCCACCAAGGAAAAGTTCTGGGAGGAGCCATTCAAGAAGCTCTAAAAGGAGTGGTGGTTATTCCAAACGTAGTAGGAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTGGATCTGCTTCTCCTTCAACTTAG 1155 0.4987 MSYSRRSRYSPSPSPSPYKGYSRYSRSLSRSLSRSRSRSRSHSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGTVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRRSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPYSPYYSRRRSYSRYDRYERRRSYSRSQSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYRRHHNRSVSPSVSPPPRRRSRRSYSRSVTPVRMRSCSRSISPRRSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKRSRSPSPSVSASSRSFSRSNTPGSASPST 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00516 384 MobiDBLite consensus disorder prediction 161 189 - -
Arst1g00516 384 MobiDBLite consensus disorder prediction 265 283 - -
Arst1g00516 384 MobiDBLite consensus disorder prediction 325 340 - -
Arst1g00516 384 MobiDBLite consensus disorder prediction 1 32 - -
Arst1g00516 384 MobiDBLite consensus disorder prediction 1 61 - -
Arst1g00516 384 MobiDBLite consensus disorder prediction 132 384 - -
Arst1g00516 384 SMART rrm1_1 56 129 IPR000504 GO:0003723
Arst1g00516 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Arst1g00516 384 CDD RRM_SF 57 129 - -
Arst1g00516 384 SUPERFAMILY RNA-binding domain, RBD 45 160 IPR035979 GO:0003676
Arst1g00516 384 MobiDBLite consensus disorder prediction 248 262 - -
Arst1g00516 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Arst1g00516 384 MobiDBLite consensus disorder prediction 353 384 - -
Arst1g00516 384 Gene3D - 7 139 IPR012677 -
Arst1g00516 384 MobiDBLite consensus disorder prediction 46 61 - -
Arst1g00516 384 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 336 - -
Arst1g00516 384 MobiDBLite consensus disorder prediction 231 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00516 Arst-Chr1 4935903 4939147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00516 56 162 Eukaryotic Initiation Factors Gene Family AT2G36660 31.776 2.56e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00516 - - adu:107494646 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00516 1 4935903 4939147 Arst1g00516 1 4935903 4939147 ECH