Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00490 ATGAGGACGATCAAAGAGATTTTCTTGAGACACTACTACTCTCTTTGGCTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACGACGTAGAGAATCACGAGAACAGCAACGTTGCCATAGAACAAAGGAAGATCAACAAAGAGGAGGGGAGAGGCGAATCACCCTCAATTTCCTCGTTCGTGTGCGAAATCTGCATTGACACTAAAATCGAAGCGGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTACGGATTGCGTGGTGAATTACGTTGGTTCTAAGCTTGACGACAACGTGATTAATATCCAGTGTCCGGTACCCCGCTGTGGTGGTTTCTTGGAACTCGACGGTTGCCGCGAGGTTCTGCCAAAGATGATTTTCGATCGGTGGGATAAGTTATTGTGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATATATTGTCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCGACGGAATCAGAATGCCCTAGCTGTAATAGGCAGATCTGCGTCTCGTGCGAGACAGTTTGGCATCATGGGAGCACGTGCGAGGAATTTGGGAGGATAGATAATAAATATAGAGTAGTGATGGAGGTAGCGACCAGGAACTAG 651 0.467 MRTIKEIFLRHYYSLWLSPSLSPPSHMNSNDVENHENSNVAIEQRKINKEEGRGESPSISSFVCEICIDTKIEAENFSITGCSHSYCTDCVVNYVGSKLDDNVINIQCPVPRCGGFLELDGCREVLPKMIFDRWDKLLCEAAVVENESERFIYCPFKDCSALMIVDDDSPTESECPSCNRQICVSCETVWHHGSTCEEFGRIDNKYRVVMEVATRN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00490 216 Pfam Zinc finger, C3HC4 type (RING finger) 64 109 IPR018957 GO:0046872
Arst1g00490 216 SMART ibrneu5 132 196 IPR002867 GO:0008270
Arst1g00490 216 FunFam RBR-type E3 ubiquitin transferase 59 145 - -
Arst1g00490 216 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Arst1g00490 216 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 199 IPR031127 GO:0004842|GO:0016567
Arst1g00490 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Arst1g00490 216 Pfam IBR domain, a half RING-finger domain 133 196 IPR002867 GO:0008270
Arst1g00490 216 SUPERFAMILY RING/U-box 146 199 - -
Arst1g00490 216 CDD BRcat_RBR_unk 147 199 - -
Arst1g00490 216 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Arst1g00490 216 ProSiteProfiles TRIAD supradomain profile. 60 216 IPR044066 -
Arst1g00490 216 SUPERFAMILY RING/U-box 61 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00490 Arst-Chr1 4639287 4639937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00490 58 196 ARIADNE family AT3G27710 24.648 5.33e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00490 K11975 - aip:107607785 191.43