Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00428 ATGATGAGTTCTGTTTCTTCTGAAACACAACAAAATAGGCCTTCTTTGATGACTAGAACGGCCATGAGAATATCGAGATCGAGATGGTTCACATTCTTGAGGAGAGTATTCCACTACCAAAACGGGCCGAGTTCTACTTCGTCAGAACTCGGCTCGAACCCTTTCATTTCCAGCACCTGGATGGGGCTGGAATTGGTTGCATTGGTGGTTCAAATAACTAGCACGACTCTCACTCTTGCGATTTCCAAGAGTGAGAGACCAATTTGGCCTATGAGGATTTGGGTAGCTGGTTATGACATTGCTTGTGTCCTTAATTTGTTGCTTCTTTGTGGCCGCTACCATCAAATTCATGTCACCACTCATAGAGATGTTCTTAGCGATTTGGAGCAGCAGAGATACAATAATGGAGATGCAAGCTTACAGAGAAGGGCACATTTGATGAACAAATGCCGGAGTTCATTAGAGCTTTTCTTTGCAATGTGGTTTGTGATGGGAAATGTTTGGGCCTTTGACTCACGGTTTGGGTCATTCCAAGAAGCCCCAAAACTCAATATTCTATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCCTATTGTTCTTGTTGCTTTGTTGCATTGTCCCTTTAATTAGTACCTTCCTTGGTTACAACATGAACATGGGATCTAATGCTAAGGGTGCTTCTGAGGATCAAATCTCTCAGATTCCAACTTGGAGATATAAACAAGTTCATGATCATCATGCCTTGGATCATTGCAATCATGATGATTGTTCTCAAACATTCATCAATGAGGATCAAGAGTGTTGCATTTGTTTGAACAAGTACAAAGACAAAGAAGAAGTTAGACAATTGCCCTGTTTCCATCTCTTCCATAAAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGGATTACAAAGGTAG 969 0.3922 MMSSVSSETQQNRPSLMTRTAMRISRSRWFTFLRRVFHYQNGPSSTSSELGSNPFISSTWMGLELVALVVQITSTTLTLAISKSERPIWPMRIWVAGYDIACVLNLLLLCGRYHQIHVTTHRDVLSDLEQQRYNNGDASLQRRAHLMNKCRSSLELFFAMWFVMGNVWAFDSRFGSFQEAPKLNILCXXXXXXXXXXXXXXXXPFLLFLLLCCIVPLISTFLGYNMNMGSNAKGASEDQISQIPTWRYKQVHDHHALDHCNHDDCSQTFINEDQECCICLNKYKDKEEVRQLPCFHLFHKKCVDQWLRIISCCPLCKQGLQR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00428 322 Pfam Ring finger domain 275 317 IPR001841 -
Arst1g00428 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 321 IPR013083 -
Arst1g00428 322 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 11 320 - -
Arst1g00428 322 SUPERFAMILY RING/U-box 260 320 - -
Arst1g00428 322 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Arst1g00428 322 SMART ring_2 276 316 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00428 Arst-Chr1 3962593 3966032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00428 19 320 C3H Transcription Factor Family AT4G26580 59.868 2.73e-117 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00428 - - ahf:112791228 612.453