Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00345 ATGATGGAATCGGATCTTGGCAAACTCTTCATTGGAGGGATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAAGTTATAGAGGCTGTGATCATGAGAGATCGCACCACCGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAGTCCATAAATAGACAGTCCGGTAGTGCGAATGCCTCTCCTGGTCCTGGGCGCACGAAAAAGATCTTTGTTGGAGGTTTGCCATCAACTATCACAGAAAGCGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGTTTCATCACATTTGATTCGGAAGAAGCTGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGGAAGTTGGTCGAAGTCAAGAGAGCAGTTCCGAAAGAGCTATCCCCTGGCCCCAGCCGAAGTCCATTGATAGGATATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAACTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGCGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTCGGCAACACTGCTTATGGAATGGGAGTGAATCTTGAGTCAGGATTGAGCCCAAGCTATGGAGGAACTTCTAGTTACGGGAGCAATATAGGATACGGTCGAATATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACTCCTATAGGCTATAGTGGGGGAAATAGCAGAAGCGACTCTATCATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGAGTCCTGAATAACGCTAATAACGCAGTCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTTGGTGTTTCAATTGGAAATAGTGGTGCTAATTGGGGTCCATCTATTCCATCCCAAGCCGGAGGAGCTGCTTCGGGCTATGCTACGGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTTGGGTTAGGCGGGGGAGGGTATGGAAGAAACAGTGGTACGGGTATGACTCCATCCTCTACGTTCGCTGCATCAACTGGTAGTTTTGAAGGATCCTATGGGGATTTATACCGAACTGGCAGTGGTTCAGTTTACAATGACTCTGCTTGGCGAACCGCTTCTTCTGAGATGGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGGTATTGCTTCAGACGACCCTGTAAAGACTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1443 0.4532 MMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNTAYGMGVNLESGLSPSYGGTSSYGSNIGYGRIFSPFYSGNSSRYTTPIGYSGGNSRSDSIMNSPSRNVWGNGVLNNANNAVSPGSFLGSGSGSFGVSIGNSGANWGPSIPSQAGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSTFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTASSEMDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVTSRQSNRGIAA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00345 480 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Arst1g00345 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Arst1g00345 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 6 88 - -
Arst1g00345 480 CDD RRM2_Hrp1p 108 185 - -
Arst1g00345 480 CDD RRM1_hnRNPA_hnRNPD_like 9 79 - -
Arst1g00345 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 83 IPR000504 GO:0003723
Arst1g00345 480 MobiDBLite consensus disorder prediction 79 106 - -
Arst1g00345 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 476 - -
Arst1g00345 480 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Arst1g00345 480 Gene3D - 87 195 IPR012677 -
Arst1g00345 480 MobiDBLite consensus disorder prediction 87 101 - -
Arst1g00345 480 Gene3D - 7 86 IPR012677 -
Arst1g00345 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Arst1g00345 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Arst1g00345 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 168 IPR000504 GO:0003723
Arst1g00345 480 SMART rrm1_1 8 79 IPR000504 GO:0003723
Arst1g00345 480 SMART rrm1_1 108 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00345 Arst-Chr1 3181001 3185454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00345 6 181 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 4.56e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00345 K14411 - gmx:100805131 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00345 1 3181001 3185454 Arst1g00345 1 3181001 3185454 ECH
Arst1g00345 1 3181001 3185454 Arst7g00346 7 2268476 2272295 PCT