Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00209 ATGTCGCGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTGACCAACGTGGCCGTCGTGCGACTCAAGAAGCATGGCATGCGCTTTGAGATCGCCTGCTACCCCAATACTGTCCTCGCTTGGCGTTCCGGCGTGGAGAAGGACCTGGATGAAGTGTTGCAGTCACATACTGTTTATTCCAATGTTTCCAAAGGTGTTCTTGCCAAGTCAAAGGATTTGATTGCTGCTTTTGGGACCGATGATCAGACCAAGATATGCTTAGAGGTTTTGAAGAAAGGGGAACTTCAGGTTGCCGGGAAAGAAAGGGAATCCTTGCTGTCGAGTCAGTTCAGGGATATTGCCACCATTGTGATGCAGAAGACATACAATCCTGAGACGCAGCGCCCTTACACTATTAGCATGATTGAGCGCCTGATGAGGGACATTCATTTTGCTGTTGATCCAAATAGCAGTTCCAAGAAGCAGGCTTTGGAGCTGATTCAGGAGCTTCAAAAGCATTACCCTATAAAACGATGTCCGTTAAGAATCCGAGTTGCTGCTCCTGAGGAGGAAGTGCCTGCCCTTTTAGAAAAGTTGAATGAGTGGAAGTCTACCATTATCTCTAAAGAAGGATCTTCTGGTCAGCTATCTGTTATCTTTGAATTGGAACCAGGTCTATATAAGGGTTGTCATGACTTCGTTGTGAACAACATGCATGGAAGATTTGAGGTTCTTGCACACTCTCTTTATGTGGATGGGGATACCCAGGTAGAACAATACACTGATGATTATGAGGATATGCCTCCACCGATGACCAAAGAAACTCGCGAATCTGTTCTTGAATTGAATGATAAACTTCAAAAGCAGACAATTTCATCTACGAGTAGGCTGCCTCCTGAGATGCAACAACAAAAGGCAAACAAGTGCAGCACATGCAATGTTTCTTTTGAGGACTCTAAACAGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGCAAGACGAGGCAACTCCCACCCCTTACCGAGGAAGAGTGCTTGGCAGACATGGAACTGGGTGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1086 0.4604 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLAWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTKICLEVLKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPETQRPYTISMIERLMRDIHFAVDPNSSSKKQALELIQELQKHYPIKRCPLRIRVAAPEEEVPALLEKLNEWKSTIISKEGSSGQLSVIFELEPGLYKGCHDFVVNNMHGRFEVLAHSLYVDGDTQVEQYTDDYEDMPPPMTKETRESVLELNDKLQKQTISSTSRLPPEMQQQKANKCSTCNVSFEDSKQYREHHKSEWHKHNMKRKTRQLPPLTEEECLADMELGDSKSDLKDYSF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00209 361 MobiDBLite consensus disorder prediction 318 361 - -
Arst1g00209 361 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Arst1g00209 361 SUPERFAMILY beta-beta-alpha zinc fingers 292 347 IPR036236 -
Arst1g00209 361 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Arst1g00209 361 FunFam SBDS, ribosome maturation factor 100 172 - -
Arst1g00209 361 FunFam SBDS, ribosome maturation factor 3 96 - -
Arst1g00209 361 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Arst1g00209 361 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Arst1g00209 361 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 242 IPR039100 -
Arst1g00209 361 MobiDBLite consensus disorder prediction 346 361 - -
Arst1g00209 361 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Arst1g00209 361 Gene3D - 174 251 - -
Arst1g00209 361 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Arst1g00209 361 Gene3D - 100 172 IPR037188 -
Arst1g00209 361 NCBIfam ribosome assembly factor SBDS 13 225 IPR002140 GO:0042256
Arst1g00209 361 Gene3D - 1 96 IPR036786 -
Arst1g00209 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 331 IPR013087 -
Arst1g00209 361 Gene3D Classic Zinc Finger 290 349 - -
Arst1g00209 361 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00209 Arst-Chr1 1932860 1937301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00209 27 361 C2H2 Transcription Factor Family AT1G43860 58.092 2.36e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst1g00209 SBDS_C 4.9e-29 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00209 K14574 - gmx:100797497 629.017