Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00195 ATGGTAATCAGGGGAGCCATTGGTAGTGGTAAGGTAAGATCCTATGACTGGAACCGCGGTCAAGGTGATAATCATACACCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCTGGTTTGGATTTACTGTTGCAGCATTTGGCCGAGAATGATCCCAATAGGCACGGAACTCCACCTGCGCAGAAGGAGGCCATCGAAGCATTGCCTACCGTGACAATTGACGAGAATATGCAATGTTCTATTTGCCTTGATGATCTTGAAGTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATAGTGGATGTATCCTTCCTTGGTTGGAGCTCCATAGTTCTTGTCCGGTTTGCAGGTATCAGTTGCCCGCTGATGAATCTAAGCGCGAACCGGATGCATCCTTGAGGACTAGCAGTAATCAAAGGGAGGATGAAAATACTGGACATGACAATGTTGATGGGGATATTGAAGGAAGAAATGCAAGTGGGAGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTATTTTCTTCACCAAACCCTTCAGCAGCATCTTCTTCTAGCAACAATCCAAATGGAGATAATGTTACTCGATCAGAAGAGAACTGA 615 0.4472 MVIRGAIGSGKVRSYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDDLEVGSEAKQMPCKHMFHSGCILPWLELHSSCPVCRYQLPADESKREPDASLRTSSNQREDENTGHDNVDGDIEGRNASGSRRFSFPWPFNGLFSSPNPSAASSSSNNPNGDNVTRSEEN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00195 204 SUPERFAMILY RING/U-box 68 128 - -
Arst1g00195 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 126 IPR013083 -
Arst1g00195 204 CDD RING-H2_RNF126-like 78 120 - -
Arst1g00195 204 MobiDBLite consensus disorder prediction 127 161 - -
Arst1g00195 204 MobiDBLite consensus disorder prediction 179 204 - -
Arst1g00195 204 Pfam Ring finger domain 78 120 IPR001841 -
Arst1g00195 204 SMART ring_2 79 119 IPR001841 -
Arst1g00195 204 MobiDBLite consensus disorder prediction 179 198 - -
Arst1g00195 204 ProSiteProfiles Zinc finger RING-type profile. 79 120 IPR001841 -
Arst1g00195 204 FunFam E3 ubiquitin-protein ligase RING1-like 46 126 - -
Arst1g00195 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 124 - -
Arst1g00195 204 MobiDBLite consensus disorder prediction 127 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00195 Arst-Chr1 1795555 1803027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00195 29 131 C3H Transcription Factor Family AT5G01980 41.667 5.06e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00195 - K11982 adu:107487277 413.69