Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst1g00186 | ATGAGGACCCGAAATGCCGATTCCTCTTCCAAATCCACAACCCCAAAGAAGGCACCGCCGGCTAGAAAAGCCGCCGCAAAATCCGCCGGAGAATCCCCTGCAGCAAAGCGCAATTCCACCGTCAAAACGAGGCAGATCAAGAAGAAGGAGGCCTCTTCCGCTTCCAACTCGATTCCCGATCCCAATCCCGATGAGCCGAATTCAGATGAGGTTGTTACCACTACACCGTATTCAAAGAGGAAGCCAGGGAGACCAAGAACTAAAGCAGTTGCCACACCTAAGCTGGAGGAAGAACTGAAGGCAGTGGCTGATGAAACTCTAGTTGTGGATAACTCTGGGGATGTGGAGGAAGCGGAAAAGCCTCAAAATGTTGAAGTTGTCGATGCTGATAATATCGATCATGAGAAAGAGGAGCACCAGGAACAAGTTGTTGAATGTGTTGGACAATCTGAAGAGAAGGAACAAAAGTCTATGGAAGTGGATGAAACTGTGAAGGGAAACAATGCAGTGGAGGCTGAAGCGACTGCTTCTCAGGATGCCACTATGTCTTCCAAACAACCTGAGCGAACTCTTGTGGACCTAAATATATCGGTGAATGAAGATGATTCTATGTGTCAAAAGGAGGGAGAGAAAGAAGATGAAGAGTTGAATGAAAGGGACGGTCGGGAAGAGTTGAAGGATCAGGAACAAGAGAAAGGAGATGTAGAGTTGAAAGAACAAGAGGGAGAGAAAGGAGGGGAGGAGCTGAAGGAACAGGAGGCAGTGAATGTAAAGGAAGAACTGAAAGAAGAGGATGGAGATAAAGGAAAGGAAGAAGTCAAAGATGAGGAAGGAGAAACAGCAAAGGAAGAAACAAAGGAAGAGGAAACAAACATTACTGGACACAAAGGATGTTCTAATACTGATAGTGCAGTAATGAAAGACCAGTCGAAGGAAGATTTTAATACTAGAATAGTTGGTGATGAAGTGACAGAGAGCAGTGAAAGGCTGGATTTTGAAGAACATGGTGGGGAGGATATTGAGGAAGATCCTGAGGAAGGTCCATGGGAACCTCCTGAAGAAAATGAGGCGCTCCAAGAGGAGCATAGGGAATTGGAGGCCATTGCAAACCAGCGAAAGAGTAACAAAGAACATGAGATATTTGTTGGAGGGCTTGACCGTGATGCTACAGAGGAAGATCTGAGAAAAGTTTTTAAGAGGATTGGGGAGGTAGTTGATGTCAGGTTGCATAAGAATTCATCAACAAATAAAAATAAGGGCTATGCATTTGTGAGGTTTGCTAATAAGGAACATGCTAAGAGAGCATTGTCAGAAATGAAGAACCCAGTTATACGTGGTAAAAGATGTGGGACTGCACCCAGTGAGGATAACAACACATTATTCTTGGGAAATATTTGCAATACGTGGACGAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTATTGATGGGGTTGAAAACATTACACTTGTGCTAGATGCTAAATGTGAAGGATTGAGCCGTGGCTTTGCATTCCTTGAGTTTTCTAGTCATGGTGATGCAATGCTTGCGTACAAGAGGCTTCAAAAGCCTGACGCGATCTTTGGGCATCCTGAGAGAAGTGCCAAGGTAGCCTTTGCTGAGCCTATGCGTGAACCAGACCCAGAGATAATGGCACAGGTTAAATCTGTGTTTATTAATGGTCTTCCTCCTCACTGGGAAGAAGATCACATCAGGGAGATGCTTAAATCTTATGGTGAAATTGTAAGAATTGTACTGGCAAGGAATATATCTACAGCCAAGAGGAAGGATTATGGATTTGTTGATTTCTCAACACATGAAGCTGCTGTTGCATGTGTTGAAGCTGTAAATAAGTCTGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGGCTATCAAATCCGGTGCCTAAAACACAAGCTGTAAAAGGTGGCATTTGTGGTGGGTTCCGAATAGGTCATGGAAGGAGTGGAGCCTTTGCAAGATCTGGAAGGGGTTATGGACGGGGAAGGCAGCCCTTCAACAGCTGGGGAAATATTAACAGGGGTAGGGGTGTCTATCATGGTGGACCCAGGCAAATAGGGAGAATGGATTTCCGGGATGACCTTGACTTTAATATGTATCCAGATTACCATCATAGGCAATTTGGTCCTGAAGGAGCTATGAGGGGTGGACATTACCCAAGTAACAGAGGTGCTGCATTTGCTGGTCCTGGTCCACCTAGACCTTATCATGATAGAGCATGGGGTAACATCCCTGCAGAAGGCCCGAGTGAGCCTTTTCCTTTAAGGAGGCCATATTCCCCAGGCGGACAGTTCAACAGGCCATTTTCACCGGGTGGACAGTTCAACAGGCCATTTATGGGAAGGCATTTTGATGATCCGTATTTTTATGATGACAATGTGCATGGGATGAAACGCCCATTTTATATGACTGACCCTGAACCTGATTATATGGGAGCTAATAGACTTCGCCCACGATTGGATTATGCAGATCCATCTTTATTTCACGAAAACCGTCACAATGATTCTTATGGAGCTGGCAGCAGACAGTACCCTCCTGATTATTATGGTTCTGATTATGGTAGAGGGCCATATTCGTCTTTTTATGGAGGTGATAGCTCACATGGGCATGGATACTACTATTAA | 2658 | 0.4473 | MRTRNADSSSKSTTPKKAPPARKAAAKSAGESPAAKRNSTVKTRQIKKKEASSASNSIPDPNPDEPNSDEVVTTTPYSKRKPGRPRTKAVATPKLEEELKAVADETLVVDNSGDVEEAEKPQNVEVVDADNIDHEKEEHQEQVVECVGQSEEKEQKSMEVDETVKGNNAVEAEATASQDATMSSKQPERTLVDLNISVNEDDSMCQKEGEKEDEELNERDGREELKDQEQEKGDVELKEQEGEKGGEELKEQEAVNVKEELKEEDGDKGKEEVKDEEGETAKEETKEEETNITGHKGCSNTDSAVMKDQSKEDFNTRIVGDEVTESSERLDFEEHGGEDIEEDPEEGPWEPPEENEALQEEHRELEAIANQRKSNKEHEIFVGGLDRDATEEDLRKVFKRIGEVVDVRLHKNSSTNKNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGDGASKIKVRARLSNPVPKTQAVKGGICGGFRIGHGRSGAFARSGRGYGRGRQPFNSWGNINRGRGVYHGGPRQIGRMDFRDDLDFNMYPDYHHRQFGPEGAMRGGHYPSNRGAAFAGPGPPRPYHDRAWGNIPAEGPSEPFPLRRPYSPGGQFNRPFSPGGQFNRPFMGRHFDDPYFYDDNVHGMKRPFYMTDPEPDYMGANRLRPRLDYADPSLFHENRHNDSYGAGSRQYPPDYYGSDYGRGPYSSFYGGDSSHGHGYYY | 885 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst1g00186 | 885 | SUPERFAMILY | RNA-binding domain, RBD | 546 | 661 | IPR035979 | GO:0003676 | |
Arst1g00186 | 885 | CDD | RRM_SF | 380 | 449 | - | - | |
Arst1g00186 | 885 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 543 | 694 | - | - | |
Arst1g00186 | 885 | CDD | RRM_SF | 558 | 632 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 113 | 161 | - | - | |
Arst1g00186 | 885 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 460 | 524 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 380 | 448 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 558 | 624 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 458 | 543 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | Gene3D | - | 457 | 542 | IPR012677 | - | |
Arst1g00186 | 885 | Gene3D | - | 350 | 456 | IPR012677 | - | |
Arst1g00186 | 885 | Gene3D | - | 544 | 694 | IPR012677 | - | |
Arst1g00186 | 885 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 378 | 456 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 50 | 75 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 1 | 357 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 335 | 354 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 306 | 334 | - | - | |
Arst1g00186 | 885 | Coils | Coil | 355 | 375 | - | - | |
Arst1g00186 | 885 | SMART | rrm1_1 | 379 | 452 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | SMART | rrm1_1 | 459 | 536 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | SMART | rrm1_1 | 557 | 632 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 458 | 542 | - | - | |
Arst1g00186 | 885 | CDD | RRM_SF | 460 | 532 | - | - | |
Arst1g00186 | 885 | Coils | Coil | 211 | 231 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 90 | 104 | - | - | |
Arst1g00186 | 885 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 556 | 636 | IPR000504 | GO:0003723 | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 725 | 745 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 170 | 202 | - | - | |
Arst1g00186 | 885 | SUPERFAMILY | RNA-binding domain, RBD | 379 | 523 | IPR035979 | GO:0003676 | |
Arst1g00186 | 885 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 207 | 885 | - | - | |
Arst1g00186 | 885 | MobiDBLite | consensus disorder prediction | 203 | 293 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst1g00186 | Arst-Chr1 | 1715153 | 1720571 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst1g00186 | 367 | 624 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.937 | 1.73e-16 | 82.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst1g00186 | - | - | aip:107627051 | 1042.34 |