Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00084 ATGGCTAGTGGGTTTGGGGAATCAACAACAACGCCGAGAAGAGAGTCTCATCCAAGCCCATCTTGCTCAGGGAACAATGGTTCTAATGATGCTGGTGATTTTGAATGCAACATATGCTTTGATTTGGCTCAAGATCCAGTGATCACACTGTGTGGGCACCTATTCTGTTGGCCATGCCTTTATATGTGGCTGCATCATCACTCTCAATGTCAAGAGTGCCCTGTGTGCAAGGCCCTTGTGCAGGAAGAGAAGCTGGTTCCTCTATATGGTAGGGGTAAGGCTCAGACTGATCCTAGGACTAAGAGTTATCCTGGAATGGAGGTTCCTCGCCGTCCCTCGGGCCAGAGGCCGGAGACAGCGCCACAACCGCCACCCCAACAGCCGGGGCCCAATTTGTTCGGGAATTATGGGTTTGGGTTGATGGGCGGATTCATACCTATGGCTACGGCAACATTTGGGAACTTCACACTGTCCACTGCTTTTGGAGGGTTTATCCCATCACTGCTTAACATTCAATTCCAACCGTTTCATGATGCCACTGTCTATGGAACAACTTCGGGGTATCCTTTTGGGTTTACTTCACACCAAGGAGGTAATCCTCGAGGCTTTACGCAGGCAGCGACACGTCAAGAGCTGAGGCCTGAGGACAATGCTCTGAAGAATCTGCTTTTGTTGATTGGTTTACTTGTACTTATCACCGTCATTTTTGTGTTGTAA 717 0.4909 MASGFGESTTTPRRESHPSPSCSGNNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYMWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAQTDPRTKSYPGMEVPRRPSGQRPETAPQPPPQQPGPNLFGNYGFGLMGGFIPMATATFGNFTLSTAFGGFIPSLLNIQFQPFHDATVYGTTSGYPFGFTSHQGGNPRGFTQAATRQELRPEDNALKNLLLLIGLLVLITVIFVL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00084 238 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Arst1g00084 238 MobiDBLite consensus disorder prediction 116 130 - -
Arst1g00084 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 99 IPR013083 -
Arst1g00084 238 SUPERFAMILY RING/U-box 32 89 - -
Arst1g00084 238 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Arst1g00084 238 SMART ring_2 36 76 IPR001841 -
Arst1g00084 238 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 20 90 - -
Arst1g00084 238 CDD RING-HC_AtRMA-like 34 78 - -
Arst1g00084 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst1g00084 238 MobiDBLite consensus disorder prediction 1 25 - -
Arst1g00084 238 MobiDBLite consensus disorder prediction 90 131 - -
Arst1g00084 238 Pfam Zinc finger, C3HC4 type (RING finger) 35 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00084 Arst-Chr1 824575 825932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00084 25 236 C3H Transcription Factor Family AT2G23780 59.729 1.74e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00084 K10666 - gmx:100814783 343.584