LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g03974	ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAACACGACGACGAGGCAAGTGACATTCTCAAAGAGAAGGAACGGACTCCTGAAGAAGACCAATGAGCTCTCTGTCCTCTGTGACGCCCAGATCGGACTCATCGTCTTCTCCAACACTGGCAAGCTCTTTCGCTACTTCTCTCACCCCTACAGGATGGATCAAATAATTGAAAAGTACCAACGATCTACAGGGACTCGCATAACGCCCCATGGACATTCCCACCATCAGGAAGATTTATTGACTGAGATGGCAATGTTGAGGCATCAAAATCTGAGCCTTGAGATGGGGATTCAGCGCTACCTTGGAGAGGGCATAGCTTGTCTCCAATATGAAGAATTGACTCAGCTTGAAGATGAAGTTCAAAGCTCTGTTGCAAGGGTTCGAACCGGAACCAAACAGGCCCAGAAACAACGAACCCGCATACCTACTCTAACCCCCAATTGA	480	0.475	MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFRYFSHPYRMDQIIEKYQRSTGTRITPHGHSHHQEDLLTEMAMLRHQNLSLEMGIQRYLGEGIACLQYEELTQLEDEVQSSVARVRTGTKQAQKQRTRIPTLTPN	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g03974	159	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Arst10g03974	159	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Arst10g03974	159	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Arst10g03974	159	SUPERFAMILY	SRF-like	2	88	IPR036879	GO:0003677\|GO:0046983
	Arst10g03974	159	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Arst10g03974	159	Pfam	K-box region	84	147	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Arst10g03974	159	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	142	-	-
	Arst10g03974	159	MobiDBLite	consensus disorder prediction	139	159	-	-
	Arst10g03974	159	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Arst10g03974	159	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Arst10g03974	159	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Arst10g03974	159	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Arst10g03974	159	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g03974	Arst-Chr10	106038353	106041029	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g03974	1	140	MADS-box Gene Family	AT5G23260	52.143	4.87e-41	136

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Arst10g03974		K-box	6.3e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g03974	-		-	adu:127742672	319.316