Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03878 ATGGCTGCTACTTCTTCATCATCAACACCGTTCTTCCAAATCAGACAAGAGAATCATGAGAATCTGATTTCACAGCAGCAGCAGCAGCTTCTTCAATCATCATCCACTACAACTTCTGCACCACCACCACCACCACCACCACCACTTCCTCAAAAGAAAAGAAGAAACCACGCTGCAGGAACACCATATCCAGATGCAGAGGTGATAGCACTGTCGCCGAAGACGTTAATGGCGACAAACAGGTTCGTATGTGAAGTTTGCAACAAAGGATTCCAAAGAGAACAGAACTTACAGCTTCACAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGAACCCTAACAAAGAGCCTAAAAGGAAGGTCTATCTCTGCCCTGAACCCACATGCGTCCACCACCACCCTTCTCGGGCTCTCGGCGACCTCACCGGCATCAAGAAACACTTCTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGTCACAAGTGTTCCAAGAAGTACGCCGTCCAGTCCGACTGGAAGGCGCACTCCAAAACCTGCGGTACCAAAGAGTATAGGTGCGACTGCGGCACCCTCTTCTCCAGGCGTGACAGTTTCATTACTCACAGAGCCTTTTGTGATGCATTAGCACATGAAAATGCATCAAGACACCCTCCTCTAAACCCTTTTGGAAATCTCTATCCCACAAACAACAACAACAACATCTTGAGCCTTGGAAATAGTACTAGCACTTTCATTGCACCAAAATTTGAGCATTTAATATCACCACCACCACCACCACCATTCAATAACAACAACCACCACCACCACCAATCTGCATTATTATTTTCACATCACTCATCATCATCACCATCACCATCACCATCACCATTCTTCATGGAAGGATTTCAAGAACTCCAGCCTCATCATCAACACCAACACCAACAAGAACCCTTATTATTCTCAACTAATAATAACAACATGAACATGTTCAACCTCAGTTTCTTCCCAAGAAGCAATAATAGCAGTGGTGGTGGAAGTAGCGTCATCACCGATCATCATCACCAAATTGGATCAGCTTTTTCTTCTTCTTCATCTTCAATCTTCGGCAACAATAATTCATCACTCCAACAACAACAACAACAAGAGAACAACAACAACAACAACGACAACAACATGTGTTCTCCACACATGTCTGCAACTGCATTGCTCCAGAAAGCTGCACAAATGGGTTCAACAACTTCAACCACCAATAACAGTAACCACAGTGCTTCTTCTCTACTAAGAGCAATGGCCAATAATAACAACAACCACCACCACCACCTCAATGCTGACGTGGACAATGATGAACACAACGACAATCTTCGCGGATTGATGAACTCTTTGGCAAATGAAAACATATCTTCTTCCATATTCGGCAACGTGAAAGAGAATGGAAACAACCACAATAATAACAATCTTGCTGGTGTGTGCTTTGGAGGATCTGATGATAAGTTGACGTTAGATTTTCTTGGTGTTGGAGGAGTTATCAGAAACATCACTGGGATCAGTACTACTTCTTTCGACCCAACAATGCAATGA 1563 0.4408 MAATSSSSTPFFQIRQENHENLISQQQQQLLQSSSTTTSAPPPPPPPPLPQKKRRNHAAGTPYPDAEVIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPNKEPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCHKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAHENASRHPPLNPFGNLYPTNNNNNILSLGNSTSTFIAPKFEHLISPPPPPPFNNNNHHHHQSALLFSHHSSSSPSPSPSPFFMEGFQELQPHHQHQHQQEPLLFSTNNNNMNMFNLSFFPRSNNSSGGGSSVITDHHHQIGSAFSSSSSSIFGNNNSSLQQQQQQENNNNNNDNNMCSPHMSATALLQKAAQMGSTTSTTNNSNHSASSLLRAMANNNNNHHHHLNADVDNDEHNDNLRGLMNSLANENISSSIFGNVKENGNNHNNNNLAGVCFGGSDDKLTLDFLGVGGVIRNITGISTTSFDPTMQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03878 520 MobiDBLite consensus disorder prediction 1 37 - -
Arst10g03878 520 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Arst10g03878 520 MobiDBLite consensus disorder prediction 353 390 - -
Arst10g03878 520 Pfam Zinc-finger double-stranded RNA-binding 82 104 IPR022755 -
Arst10g03878 520 Gene3D Classic Zinc Finger 65 123 - -
Arst10g03878 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Arst10g03878 520 FunFam protein indeterminate-domain 12-like 61 130 - -
Arst10g03878 520 MobiDBLite consensus disorder prediction 38 52 - -
Arst10g03878 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 508 IPR031140 -
Arst10g03878 520 Gene3D Classic Zinc Finger 124 207 - -
Arst10g03878 520 SMART c2h2final6 159 179 IPR013087 -
Arst10g03878 520 SMART c2h2final6 82 104 IPR013087 -
Arst10g03878 520 SMART c2h2final6 124 154 IPR013087 -
Arst10g03878 520 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
Arst10g03878 520 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Arst10g03878 520 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03878 Arst-Chr10 105522719 105526801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03878 1 219 IDZ Gene Family AT2G02070 74.429 3.60e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst10g03878 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03878 K25870 - gmx:102663407 437.187