Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03877 ATGAAGCGCGACTACTATGAAATCTCCGACGACGAATGGGACCAACACGAAGAACAGTTCAAGCCCTCACGAATCCTCAAGAGACCCAACTCCACTCCTCCTTCTCCTCCTCCCATCGAGTCCTTCGCTTACAACAACAATAATTGCCACGACGAGGACGACGATTGCGTTGAAATCACTCGCGCTTCCGCAGCTTTTCCGGACGAATTGGACGATCTGGAGGATGATGACGTGGATAACAACAATTCCACTGCAGCTGCAGCCCCGAATCGTGGCCGTCGGTTCATCATCGACGATGACGACGAAGATGGCGAGGAAGAGGAAAGTAATCGGAATAGGAATAGGAATGTTGCGGAATTGTATGAAATAGGGTCATCTTCTTCGGAGGAAATTGAGGAAGAAGAGGTTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCAAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGGTCGTCGGTGACTGCATGCGACAGGTATTCTGAAGTGGAGTCTTCTTCAGTGAGGATCGTAACTCAGGACGATGTAGACGTTGCGTGTGGGTATGAGGATGAGGATTCGGATTTTCAACCTCTACTGAAGCCGTATCAGCTTGTTGGTGTCAACTTCTTGCTTCTACTGTATCGGAAGCGGATTGGAGGAGCCATATTGGCAGATGAAATGGGGCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCCTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCATCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCGTGCTGATGGATGAAGCTCATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATTTAATGGCTGTTGCACGGAATGCAAACCAACGATTGATGTTGACTGGGACACCACTTCAGAACGATTTACATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGGTGTTGACTTAAAAAAGCTGCTCAATCCAGACAATAGAGATTTAATCGGTCGTATGAAGTCTATATTGGGGCCATTTATTTTGCGGCGTTTGAAATCTGATGTGATGCAGCAGCTTGTTCCTAAAATACAGAAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTCTCACAAGCTCGGATAGCCAAGTGCTCTGAGCTTAACACCAAATCTGTTCTTGAAGCTCTTCCACGCCGACAAATAAATAACTACTTTGTTCAGTTCAGAAAGATTGCTAACCATCCCTTGCTGATACGGAGAATCTATAATGATGACGATGTCATTCGCTTTGCTAGGAAGTTGCATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTAGACAGAGTTATAGAGGAACTTAAAAGTTACAACGACTTCTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAGAAAAGGGATACTTTCCGAAAACCATGTTATGCTTTCTGCAAAATGTGGGGCCTTGGCAGAGCTTCTTCCTTCACTAAAGAAGGACGGTCATCGTGTCTTGATCTTTAGTCAATGGACGTCAATGCTTGACATATTGGAGTGGACCTTAGATGTCATTGGATTGACCTACAAACGACTTGATGGAAGTACACAGGTGGCTGAAAGGCAAACGATAGTTGATACATTCAACAACAATACTTCCATTTTTGCATGCTTGCTATCGACAAGAGCCGGAGGACAAGGTTTGAACTTAACGGGAGCTGACACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATAGAATTGGTCAAACGAAGCCTGTAACCATATACCGGTTGGTAACTAGGGGAACAGTTGATGAAAATGTATATGAGATCGCGAAGAGAAAGTTGGTACTCGATGCTGCTGTCCTCGAGTCCATGGAGGAGGTTAGTGATGGCGACATGCCTGAGAAAACCATGGGAGAGATATTATCTGCAATTTTGTTGAGTTAA 2262 0.443 MKRDYYEISDDEWDQHEEQFKPSRILKRPNSTPPSPPPIESFAYNNNNCHDEDDDCVEITRASAAFPDELDDLEDDDVDNNNSTAAAAPNRGRRFIIDDDDEDGEEEESNRNRNRNVAELYEIGSSSSEEIEEEEVMEGDVVGRALHKCAKISAELKGELFGSSVTACDRYSEVESSSVRIVTQDDVDVACGYEDEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMAVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEGVDLKKLLNPDNRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSELNTKSVLEALPRRQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILSENHVMLSAKCGALAELLPSLKKDGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEEVSDGDMPEKTMGEILSAILLS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03877 753 Gene3D - 190 455 IPR038718 -
Arst10g03877 753 FunFam Protein CHROMATIN REMODELING 19 isoform A 173 453 - -
Arst10g03877 753 PANTHER SNF2/RAD54 HELICASE FAMILY 86 729 - -
Arst10g03877 753 SMART ultradead3 200 405 IPR014001 -
Arst10g03877 753 Pfam Helicase conserved C-terminal domain 582 692 IPR001650 -
Arst10g03877 753 Gene3D - 541 750 IPR027417 -
Arst10g03877 753 MobiDBLite consensus disorder prediction 1 24 - -
Arst10g03877 753 MobiDBLite consensus disorder prediction 1 53 - -
Arst10g03877 753 SMART helicmild6 609 692 IPR001650 -
Arst10g03877 753 MobiDBLite consensus disorder prediction 67 115 - -
Arst10g03877 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 583 734 IPR001650 -
Arst10g03877 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 733 IPR027417 -
Arst10g03877 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 395 IPR014001 -
Arst10g03877 753 CDD DEXHc_Snf 204 397 - -
Arst10g03877 753 Pfam SNF2-related domain 222 510 IPR000330 GO:0005524|GO:0140658
Arst10g03877 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 430 IPR027417 -
Arst10g03877 753 CDD SF2_C_SNF 577 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03877 Arst-Chr10 105505510 105512972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03877 225 731 RAD5 or RAD16-like Gene Family AT5G22750 27.113 1.67e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst10g03877 SNF2_N 4.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03877 K14439 - gmx:100806323 1225.69