Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03876 ATGAAGCGCGACTACTATGAAATCTCCGACGACGAATGGGACCAACACGAAGAACAGTTCAAGCCCTCACGAATCCTCAAGAGACCCAACTCCACTCCTCCTTCTCCTCCTCCCATCGAGTCCTTCGCTTACAACAACAATAATTGCCACGACGAGGACGACGATTGCGTTGAAATCACTCGCGCTTCCGCAGCTTTTCCGGACGAATTGGACGATCTGGAGGATGATGACGTGGATAACAACAATTCCACTGCAGCTGCAGCCCCGAATCGTGGCCGTCGGTTCATCATCGACGATGACGACGAAGATGGCGAGGAAGAGGAAAGTAATCGGAATAGGAATAGGAATGTTGCGGAATTGTATGAAATAGGGTCATCTTCTTCGGAGGAAATTGAGGAAGAAGAGGTTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCAAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGGTCGTCGGTGACTGCATGCGACAGGTATTCTGAAGTGGAGTCTTCTTCAGTGAGGATCGTAACTCAGGACGATGTAGACGTTGCGTGTGGGTATGAGGATGAGGATTCGGATTTTCAACCTCTACTGAAGCCGTATCAGCTTGTTGGTGTCAACTTCTTGCTTCTACTGTATCGGAAGCGGATTGGAGGAGCCATATTGGCAGATGAAATGGGGCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCCTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCATCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGGTTCGTTTGTCTACACAGAGATGCCATTTCTACAAAATATTCCGGTGTTAACTACATGTTTATAATTTATATTCACTCTAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCGTGCTGATGGATGAAGCTCATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATTTAATGGCTGTTGCACGGAATGCAAACCAACGATTGATGTTGACTGGGACACCACTTCAGAACGATTTACATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGGTGTTGACTTAAAAAAGCTGCTCAATCCAGACAATAGAGATTTAATCGGTCGTATGAAGTCTATATTGGGGCCATTTATTTTGCGGCGTTTGAAATCTGATGTGATGCAGCAGCTTGTTCCTAAAATACAGAAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTCTCACAAGCTCGGATAGCCAAGTGCTCTGAGCTTAACACCAAATCTGTTCTTGAAGCTCTTCCACGCCGACAAATAAATAACTACTTTGTTCAGTTCAGAAAGATTGCTAACCATCCCTTGCTGATACGGAGAATCTATAATGATGACGATGTCATTCGCTTTGCTAGGAAGTTGCATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTAGACAGAGTTATAGAGGAACTTAAAAGTTACAACGACTTCTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAGAAAAGGGATACTTTCCGAAAACCATGTTATGCTTTCTGCAAAATGTGGGGCCTTGGCAGAGCTTCTTCCTTCACTAAAGAAGGACGGTCATCGTGTCTTGATCTTTAGTCAATGGACGTCAATGCTTGACATATTGGAGTGGACCTTAGATGTCATTGGATTGACCTACAAACGACTTGATGGAAGTACACAGGTGGCTGAAAGGCAAACGATAGTTGATACATTCAACAACAATACTTCCATTTTTGCATGCTTGCTATCGACAAGAGCCGGAGGACAAGGTTTGAACTTAACGGGAGCTGACACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATAGAATTGGTCAAACGAAGCCTGTAACCATATACCGGTTGGTAACTAGGGGAACAGTTGATGAAAATGTATATGAGATCGCGAAGAGAAAGTTGGTACTCGATGCTGCTGTCCTCGAGTCCATGGAGGAGGTTAGTGATGGCGACATGCCTGAGAAAACCATGGGAGAGATATTATCTGCAATTTTGTTGAGTTAA 2343 0.4388 MKRDYYEISDDEWDQHEEQFKPSRILKRPNSTPPSPPPIESFAYNNNNCHDEDDDCVEITRASAAFPDELDDLEDDDVDNNNSTAAAAPNRGRRFIIDDDDEDGEEEESNRNRNRNVAELYEIGSSSSEEIEEEEVMEGDVVGRALHKCAKISAELKGELFGSSVTACDRYSEVESSSVRIVTQDDVDVACGYEDEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHRFVCLHRDAISTKYSGVNYMFIIYIHSSPQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMAVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEGVDLKKLLNPDNRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSELNTKSVLEALPRRQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILSENHVMLSAKCGALAELLPSLKKDGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEEVSDGDMPEKTMGEILSAILLS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03876 780 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 610 761 IPR001650 -
Arst10g03876 780 PANTHER SNF2/RAD54 HELICASE FAMILY 86 756 - -
Arst10g03876 780 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 422 IPR014001 -
Arst10g03876 780 CDD SF2_C_SNF 604 730 - -
Arst10g03876 780 Pfam Helicase conserved C-terminal domain 609 719 IPR001650 -
Arst10g03876 780 SMART helicmild6 636 719 IPR001650 -
Arst10g03876 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 457 IPR027417 -
Arst10g03876 780 MobiDBLite consensus disorder prediction 1 24 - -
Arst10g03876 780 Pfam SNF2-related domain 222 537 IPR000330 GO:0005524|GO:0140658
Arst10g03876 780 MobiDBLite consensus disorder prediction 1 53 - -
Arst10g03876 780 MobiDBLite consensus disorder prediction 67 115 - -
Arst10g03876 780 SMART ultradead3 200 432 IPR014001 -
Arst10g03876 780 CDD DEXHc_Snf 204 424 - -
Arst10g03876 780 Gene3D - 468 777 IPR027417 -
Arst10g03876 780 Gene3D - 181 439 IPR038718 -
Arst10g03876 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 760 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03876 Arst-Chr10 105505508 105512972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03876 225 758 RAD5 or RAD16-like Gene Family AT5G22750 26.187 5.22e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst10g03876 SNF2_N 1.3e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03876 K14439 - gmx:100806323 1211.05