Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03874 ATGGCTTCCTCTAGCTTCCAACACAATCACCATTCTCCTTCAACTGTGATCAGTTTCTTCATGATTGTTCTCACAGAAAGCCTTCAAAATGGAATTCTTAAGCTACCAAACAAGTTTAGTAAGAAATATGGTAATGGTTTTCCGAATCCAGTGTATCTGAAGCCTGCAGATGACACTGAATGGAAAATAGTTTGGACTAATAAAGATGGTGAGATTCAGTTTGAAAAGGGCTGGAGAGAGTTTGCTGCATATTACTCTCTTGAAAATGGCCATTTGTATGTGGTTTGA 288 0.3819 MASSSFQHNHHSPSTVISFFMIVLTESLQNGILKLPNKFSKKYGNGFPNPVYLKPADDTEWKIVWTNKDGEIQFEKGWREFAAYYSLENGHLYVV 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03874 95 Gene3D - 12 95 IPR015300 -
Arst10g03874 95 PANTHER B3 DOMAIN-CONTAINING 10 94 - -
Arst10g03874 95 SUPERFAMILY DNA-binding pseudobarrel domain 14 92 IPR015300 -
Arst10g03874 95 ProSiteProfiles B3 DNA-binding domain profile. 18 95 IPR003340 GO:0003677
Arst10g03874 95 CDD B3_DNA 19 94 IPR003340 GO:0003677
Arst10g03874 95 Pfam B3 DNA binding domain 25 94 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03874 Arst-Chr10 105483078 105485043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03874 19 94 B3 DNA Binding Superfamily AT3G18990 28.947 1.23e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03874 B3 1.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03874 - - adu:107471605 192.586