Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03872 ATGGCTTCCTCTAGCTTCCAACACAATCACCATTCTCCTTCAACTGTGATCAGTTTCTTCATGATTGTTCTCACAGAAAGCCTTCAAAATGGAATTCTTAAGCTACCAAACAAGTTTAGTAAGAAGTATGGTAATGGTTTTCCGAATCCAGTGTATCTGAAGCCTGCAGATGACACTGAATGGAGAATAGATTGGACTAATCAAGATGGTGAGATTCAGTTTGAAAAGGGCTGGAGAGAGTTTGCTGCATATTACTCTCTCGAAAATGGCCATTTGTTGTGGTTTGAGTACAACGGAACTTCTAAAATGGAAGTACAAATATTCGACATGAGTTGCCTTGAGATAGAGTATCCTTCCAAGGACCTCATCAATGATGGTAACTTGGCTGGGATCTTGAATGAACAGCCGCAGCCAAAGGAAAAGGCGAATGCAGCACCGAAGCCATCATCTCCTTCTAGAGGTAAAAGAGTGAAATTTACTGTTGAAACTATAGATTTGGAAGATAGTGAAGAAGATAACCAATTGGATAGCCAATCCGAAGAGACACAGCTTAAGAAATTGCCATATGTGAATGATTTCTATCCTGGGACCAGTGGGTTTCATGCTCTGAATGAAGCACTGAAATTCAAATCAGAAAATCCCTTTTTCATAGTCAAGGCAAGGCAAAGCAATGTATCAAGACCAACTGTTAATTTCCAAGCTTCCTTTTTCAGAAAGTATTCTGAAAAGGAGCAGAATGTACAGATAAGGTTTCAGAAGATATTGATTCCTGCAAAGCTGCGCTGTTATCCATATAATTCTCAGGCCATTATCTCTTCCGGTTGGGGTCTTTTCGTTCGAACAAGTACACTACAACCTGGGGATGTTACTATTTTTGAGCTCATCGAAAGAGAAGATCCAGTGCTTGATGTTCATATTTATAGAGCCCAAGCTTTCCAGCCTCAGAGCTCTGGGATTCAATCTCAGAAAGAAGCTAAGAAGTCCAAAAGTCCAAAAGAATCTAAGAACTCCGAGGCACAAAATCCCTCTTTCGTGATCAAGATAACAGAAAGTGATCTATCAAAATCAAGGGCTAAAGTGCCAGTTTCCTTCTTCAACAAGTATTTCAAAAAGAAGGAGCCATATGTAGTGATAAGATTTGATAGCAAGTTGTGGCCTGCAAAGTTGCTGTGTTATCCGGGTAGTGCCTATATCTCCTGCGGTTGGCTGGATTTCACTCTTGACAATAATTTAAAAGCTGGAGATGTTTGTATCCTTGAGCTCGTCAATGGAAAAGATGCATTGCTCGAATGTCGAATTTATAGAGCAGATGGTTAA 1317 0.4009 MASSSFQHNHHSPSTVISFFMIVLTESLQNGILKLPNKFSKKYGNGFPNPVYLKPADDTEWRIDWTNQDGEIQFEKGWREFAAYYSLENGHLLWFEYNGTSKMEVQIFDMSCLEIEYPSKDLINDGNLAGILNEQPQPKEKANAAPKPSSPSRGKRVKFTVETIDLEDSEEDNQLDSQSEETQLKKLPYVNDFYPGTSGFHALNEALKFKSENPFFIVKARQSNVSRPTVNFQASFFRKYSEKEQNVQIRFQKILIPAKLRCYPYNSQAIISSGWGLFVRTSTLQPGDVTIFELIEREDPVLDVHIYRAQAFQPQSSGIQSQKEAKKSKSPKESKNSEAQNPSFVIKITESDLSKSRAKVPVSFFNKYFKKKEPYVVIRFDSKLWPAKLLCYPGSAYISCGWLDFTLDNNLKAGDVCILELVNGKDALLECRIYRADG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03872 438 CDD B3_DNA 257 308 IPR003340 GO:0003677
Arst10g03872 438 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Arst10g03872 438 ProSiteProfiles B3 DNA-binding domain profile. 271 310 IPR003340 GO:0003677
Arst10g03872 438 SUPERFAMILY DNA-binding pseudobarrel domain 338 435 IPR015300 -
Arst10g03872 438 CDD B3_DNA 342 435 IPR003340 GO:0003677
Arst10g03872 438 MobiDBLite consensus disorder prediction 129 155 - -
Arst10g03872 438 CDD B3_DNA 19 109 IPR003340 GO:0003677
Arst10g03872 438 ProSiteProfiles B3 DNA-binding domain profile. 343 437 IPR003340 GO:0003677
Arst10g03872 438 SMART B3_2 19 111 IPR003340 GO:0003677
Arst10g03872 438 SMART B3_2 344 437 IPR003340 GO:0003677
Arst10g03872 438 SMART B3_2 215 310 IPR003340 GO:0003677
Arst10g03872 438 SUPERFAMILY DNA-binding pseudobarrel domain 209 309 IPR015300 -
Arst10g03872 438 PANTHER B3 DOMAIN-CONTAINING 324 424 - -
Arst10g03872 438 SUPERFAMILY DNA-binding pseudobarrel domain 15 111 IPR015300 -
Arst10g03872 438 Gene3D - 199 312 IPR015300 -
Arst10g03872 438 Gene3D - 321 437 IPR015300 -
Arst10g03872 438 Pfam B3 DNA binding domain 25 109 IPR003340 GO:0003677
Arst10g03872 438 Pfam B3 DNA binding domain 346 436 IPR003340 GO:0003677
Arst10g03872 438 Gene3D - 13 112 IPR015300 -
Arst10g03872 438 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03872 Arst-Chr10 105478773 105481950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03872 308 437 B3 DNA Binding Superfamily AT3G18990 28.244 8.65e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03872 B3 6.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03872 - - adu:107471605 874.774