Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03870 ATGGCTTCAACTAGCTTCCAACCAAAGAACAAGTCTCCTTCCACTGTGATCAGCTTCTTCAAGATTCTTCTCAGTAAAAGTCTCCAAGCTGGAACTCTTATACCAAGAAAGTTCAGTAGGATATATGGTGGTGGTGTGCCGAATCCAGTGTATCTTAAGCTTCCAGACGGCACTCAATGGAAAATAGATTGGACTAATCATAATGGTGAGATTATATTTGAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTAGATCAAGGGCACTTGTTGTGGTTTGACTATAAAAAAACTTCTCTTTTTGAAGTACACATATTTGACATGAGTTGCCTTGAAATAAACTATCCTCCCTATGATCACACTGATGATGATTGTGTTGAGATTTTAAATAAGCCCCCATCACCAGTCCGGGGGGATCTAAGGAAGCGGTCGGTAGCACCATTATCGACTCCTTCTAAAACGAAACGATTGAGAAGTGCTACAAAATCTAGAGATGTTGAAAGAGGTAGCCAATCTAAGGATACAAGCCTTGAAATGCCAGTGTTTTCATCTTCCCGGCAAGATTTCCTTGATTTCTCTCCTGGGACCAGTGGGTTTAAGGCTCTGAAAGAAGCTGAGAAGTTCAGCTCTGAAAATCCCTTTTTCATTGTCAAGATAAGGCAAGCTATACGTTCAAACCGTAATTTTCCAGCTTCCTTTTTCATAAAATACTTTAAAAATGAGGAGCAGAAAGTAAAGATAAGGTTTGAGGGGAAGTTGTTTCCTGCAAAGTTGCGCTATTATCGACAAAATTCTACTGCCTTTATCTCTTCTGGATGGCTCCAATTTGCTCAAGCAAGTAAATTACAACCTGGGGATGTTACTGTGTTTGAGCTCGTCGATAGAGACGATCCGGTGTTTGAAACTCATATTTATAGAGCCAAAGCTTTCAAGTCATGGTCCTGTGGCTTTCAATCTCTAAAAGCAGCTCGGAATTTCAAGTCAGAAAATCCCTCTTTCATGGTAAAGATCACACAAACAAATCTACCAAGAACAACTGCTGTCATACCAGTTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGCCGAATATACATATAAAGTTGAGAAACAAGTTGTTGGCAGCAAAGTTGCTCTATTATCCATCATCTTCTGCTGCCTATATCTCTGCCGGTTGGCAAGCTTTTGTTGCTGCCAGTAATTTAAAGGCTGGAGATGTTTGTGTCTTTGAGCTTGTCAATGAAAAAGATCGAGTGCTCGATGTTCATATTTATAGAGCCGGTCGTTTGTTAAGCTTTTAG 1305 0.3985 MASTSFQPKNKSPSTVISFFKILLSKSLQAGTLIPRKFSRIYGGGVPNPVYLKLPDGTQWKIDWTNHNGEIIFENGWKEFAAYYSLDQGHLLWFDYKKTSLFEVHIFDMSCLEINYPPYDHTDDDCVEILNKPPSPVRGDLRKRSVAPLSTPSKTKRLRSATKSRDVERGSQSKDTSLEMPVFSSSRQDFLDFSPGTSGFKALKEAEKFSSENPFFIVKIRQAIRSNRNFPASFFIKYFKNEEQKVKIRFEGKLFPAKLRYYRQNSTAFISSGWLQFAQASKLQPGDVTVFELVDRDDPVFETHIYRAKAFKSWSCGFQSLKAARNFKSENPSFMVKITQTNLPRTTAVIPVPFFTKYFAKKKPNIHIKLRNKLLAAKLLYYPSSSAAYISAGWQAFVAASNLKAGDVCVFELVNEKDRVLDVHIYRAGRLLSF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03870 434 Gene3D - 13 111 IPR015300 -
Arst10g03870 434 SUPERFAMILY DNA-binding pseudobarrel domain 327 428 IPR015300 -
Arst10g03870 434 CDD B3_DNA 18 108 IPR003340 GO:0003677
Arst10g03870 434 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Arst10g03870 434 Pfam B3 DNA binding domain 228 308 IPR003340 GO:0003677
Arst10g03870 434 Pfam B3 DNA binding domain 19 108 IPR003340 GO:0003677
Arst10g03870 434 Pfam B3 DNA binding domain 337 428 IPR003340 GO:0003677
Arst10g03870 434 SMART B3_2 19 110 IPR003340 GO:0003677
Arst10g03870 434 SMART B3_2 334 429 IPR003340 GO:0003677
Arst10g03870 434 SMART B3_2 215 309 IPR003340 GO:0003677
Arst10g03870 434 MobiDBLite consensus disorder prediction 137 178 - -
Arst10g03870 434 ProSiteProfiles B3 DNA-binding domain profile. 333 429 IPR003340 GO:0003677
Arst10g03870 434 Gene3D - 198 311 IPR015300 -
Arst10g03870 434 Gene3D - 318 429 IPR015300 -
Arst10g03870 434 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Arst10g03870 434 CDD B3_DNA 214 307 IPR003340 GO:0003677
Arst10g03870 434 ProSiteProfiles B3 DNA-binding domain profile. 213 309 IPR003340 GO:0003677
Arst10g03870 434 CDD B3_DNA 332 427 IPR003340 GO:0003677
Arst10g03870 434 SUPERFAMILY DNA-binding pseudobarrel domain 209 309 IPR015300 -
Arst10g03870 434 MobiDBLite consensus disorder prediction 159 173 - -
Arst10g03870 434 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 322 429 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03870 Arst-Chr10 105473304 105475892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03870 297 432 B3 DNA Binding Superfamily AT3G18990 31.206 1.06e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03870 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03870 - - adu:107471605 420.239