Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03860 ATGGCTTCCTCTAGATTCCAAAAAAACAAGCGTTCTCGTTCCTCTGTGATCCGTTTCTTCAAAATTGTTCTCAGACATAGCCTTGAAGATGGAAAGCTTAAGGTACCAAAAATGTTCAACATGAAACATGGTCGCGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCCATTCTATTTGAAAATGGTTGGAAAGGATTTGCTTCGTATTACTCTCTGGATAATGGCCATGTGCTGTGGTTTGTGTACAATCAAACTTCTAACATTGAAGTATACATTTTTAACAGGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACAGCCCCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGCAAAATGGTCACAAGTTCTGCCAAAACTAAAGTAGTGAAAGGGTGCCCTGAAAGAAACTATCCTTCCAAGGACCACATTGATGATGTCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCAGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACGAAACAAACCATCTCCTTGTACAAGCAAAAAGGTCACAAGTTCTGCCAAGAATAGAGTAGTGAAACGGTGCCCTGAAATAGGCTATCCTTCCAAGAACCACATTAACAATGACAACATGGTTAAGGTTGTGAATGAACCGCCACGAAGGGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGAAACCATCTGCTTGTACAAGTAAAAGGTTCACAAGTTCTGCCAATACTAGAATGGTGAAATGGTGCCCTGAGATAGACTATCCTTCCAAGGACCACATTGATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGTAGAAGTATCATCTCCTTCTACAAGTAAAACATTGTGGAGTTCTGTCAAAACTGGAGATGTAGAGAAGGGCCCTGATAAACAAAACTGGATGCTGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAAGAGACAGGTCTTAAGATGCCAACAATTCCAAGTGCCAGTGTTGGTCCTGATAGTATGTAA 1191 0.4391 MASSRFQKNKRSRSSVIRFFKIVLRHSLEDGKLKVPKMFNMKHGRGVPNPVYLKPPDGTAWKIDWSEYDGAILFENGWKGFASYYSLDNGHVLWFVYNQTSNIEVYIFNRTCLEIDYPSLDHISDDDSIEILNEQPPRGWPRKTEKAAPKTPSASTSKMVTSSAKTKVVKGCPERNYPSKDHIDDVNMVKVENEPPRRGRGRPRKTEKAARNKPSPCTSKKVTSSAKNRVVKRCPEIGYPSKNHINNDNMVKVVNEPPRRGRGRPRKTEKAAPKKPSACTSKRFTSSANTRMVKWCPEIDYPSKDHIDDDNMVKVENEPPRRGRGRPRKKLKAAVEVSSPSTSKTLWSSVKTGDVEKGPDKQNWMLCCKNEEASQSEETGLKMPTIPSASVGPDSM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03860 396 PANTHER B3 DOMAIN-CONTAINING 10 256 - -
Arst10g03860 396 SMART B3_2 19 111 IPR003340 GO:0003677
Arst10g03860 396 MobiDBLite consensus disorder prediction 254 285 - -
Arst10g03860 396 Pfam B3 DNA binding domain 19 110 IPR003340 GO:0003677
Arst10g03860 396 MobiDBLite consensus disorder prediction 307 323 - -
Arst10g03860 396 MobiDBLite consensus disorder prediction 336 350 - -
Arst10g03860 396 PRINTS AT-hook-like domain signature 257 268 IPR017956 GO:0003677
Arst10g03860 396 PRINTS AT-hook-like domain signature 319 329 IPR017956 GO:0003677
Arst10g03860 396 PRINTS AT-hook-like domain signature 197 207 IPR017956 GO:0003677
Arst10g03860 396 MobiDBLite consensus disorder prediction 174 201 - -
Arst10g03860 396 SMART AT_hook_2 197 209 IPR017956 GO:0003677
Arst10g03860 396 SMART AT_hook_2 321 333 IPR017956 GO:0003677
Arst10g03860 396 SMART AT_hook_2 259 271 IPR017956 GO:0003677
Arst10g03860 396 MobiDBLite consensus disorder prediction 131 227 - -
Arst10g03860 396 MobiDBLite consensus disorder prediction 307 396 - -
Arst10g03860 396 CDD B3_DNA 18 109 IPR003340 GO:0003677
Arst10g03860 396 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Arst10g03860 396 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Arst10g03860 396 PRINTS High mobility group protein (HMGY) signature 310 329 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst10g03860 396 PRINTS High mobility group protein (HMGY) signature 257 269 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst10g03860 396 Gene3D - 12 112 IPR015300 -
Arst10g03860 396 MobiDBLite consensus disorder prediction 149 164 - -
Arst10g03860 396 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03860 Arst-Chr10 105399534 105401500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03860 7 131 B3 DNA Binding Superfamily AT4G01580 37.209 9.48e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03860 B3 4.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03860 - - adu:107471693 785.408