Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03858 ATGGCTTCTTCTAGCCGTCAACAAAACAATCATTCTCCTTCTACTTCTACTGTAATTTGTTTCTTTAAGATTGTTCTCAGACAAGCTCTTCAAGATGAAGACTTTAAGTTACCAATAAGCACTGAAAAATATGGTTCTGACCTATCAAACCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAGAGTAGAGTGGACTAATCATAATGGTGAAATTTTGTTTAAAAACGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGAGTGCAATATTGGAACATCTCACATGAAAGTAAACATATTTGACATGAATTGCCTCCAAATAGAGTATCCTGCTAATGATCAGATCAAAGAGCAGCTGACAAGCAGGGGTCAGCAGCCGGTGAAAAAGCAAGAAGAACAAAAAATTAGAGATATGGATAGCAGTCGCAACACCCAAAACATGAGACTTAACGAGGGACCGCAGAAGAAAAGATTGAATGAATCATTGCCAAGAGAAGTCTGGGACCAACCGAGGAAAAAACTAAGAGCACTAGTGTCATCTGGTTCTAAAGATAGACACTTGGAAAATGACACACAAATTAAGGATGTAGAAAGAAGCTTCAATTCGCACGGTATTAAATCTAAAGAAAAAAATCATGAGATGCCAGTGTCTGTCAATCAAGATTCTAATGGTAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTCCTGTTATGCCCTGTCCTACAAGACTTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTACAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAATTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTATTAAATTACAAGCCGGAGATATTTGTTTGTTTAAGCTCATCAATAGAAAAGATCCGGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTAAACCAGTGACTCATGGGATTCAACTCTTCAAAGAAGTTAAGGAGCTCAACTCACATAATCCCTCTTTTATGGTCAAGATAAGAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAGTATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGGAATCGTGGCCTGCTACGATAATCTACAATCCGACGTCGAAAAACAGCTTTATTTCGGCTGGTTGGAGTTCTTTTGCTAGAGCAAATAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATGAAAAAGATCTATTTGATGTTCATATTTGTAGAGCCCAATGCTAG 1467 0.3763 MASSSRQQNNHSPSTSTVICFFKIVLRQALQDEDFKLPISTEKYGSDLSNPLYLKPPDGTEWRVEWTNHNGEILFKNGWKEFVAYYSLDHGHLLWFECNIGTSHMKVNIFDMNCLQIEYPANDQIKEQLTSRGQQPVKKQEEQKIRDMDSSRNTQNMRLNEGPQKKRLNESLPREVWDQPRKKLRALVSSGSKDRHLENDTQIKDVERSFNSHGIKSKEKNHEMPVSVNQDSNGKRNRRRKDSESPVMPCPTRLESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKFYRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARAIKLQAGDICLFKLINRKDPVLDVHICRRQRRESLKPVTHGIQLFKEVKELNSHNPSFMVKIRDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKESWPATIIYNPTSKNSFISAGWSSFARANKLEAGDVCVFELINEKDLFDVHICRAQC 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03858 488 Pfam B3 DNA binding domain 408 486 IPR003340 GO:0003677
Arst10g03858 488 Pfam B3 DNA binding domain 35 111 IPR003340 GO:0003677
Arst10g03858 488 Pfam B3 DNA binding domain 280 365 IPR003340 GO:0003677
Arst10g03858 488 CDD B3_DNA 391 485 IPR003340 GO:0003677
Arst10g03858 488 CDD B3_DNA 20 111 IPR003340 GO:0003677
Arst10g03858 488 ProSiteProfiles B3 DNA-binding domain profile. 311 365 IPR003340 GO:0003677
Arst10g03858 488 MobiDBLite consensus disorder prediction 137 151 - -
Arst10g03858 488 SMART B3_2 270 365 IPR003340 GO:0003677
Arst10g03858 488 SMART B3_2 21 113 IPR003340 GO:0003677
Arst10g03858 488 SMART B3_2 393 487 IPR003340 GO:0003677
Arst10g03858 488 Gene3D - 252 366 IPR015300 -
Arst10g03858 488 Gene3D - 377 487 IPR015300 -
Arst10g03858 488 Gene3D - 15 114 IPR015300 -
Arst10g03858 488 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Arst10g03858 488 MobiDBLite consensus disorder prediction 163 225 - -
Arst10g03858 488 SUPERFAMILY DNA-binding pseudobarrel domain 264 364 IPR015300 -
Arst10g03858 488 SUPERFAMILY DNA-binding pseudobarrel domain 19 120 IPR015300 -
Arst10g03858 488 SUPERFAMILY DNA-binding pseudobarrel domain 386 486 IPR015300 -
Arst10g03858 488 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 382 486 IPR044837 -
Arst10g03858 488 ProSiteProfiles B3 DNA-binding domain profile. 392 487 IPR003340 GO:0003677
Arst10g03858 488 MobiDBLite consensus disorder prediction 129 250 - -
Arst10g03858 488 CDD B3_DNA 268 363 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03858 Arst-Chr10 105373241 105376556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03858 383 478 B3 DNA Binding Superfamily AT3G18990 32.990 1.58e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03858 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03858 - - adu:107471893 816.609