Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst10g03856 | ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTTAGACAAAGCCTTGAAGATGGAAATCTTACCATACCAAAAACGTTCAGTATGGAATTTGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATCATGGTGGCATTCTATTTGAAAATGGTTGGAAAGAATTTGCCTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTCTAACATTCAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTGAAGGAGTGAAATGGTGCCCCAAAATAGACTATCCTTCCAAGGACCACATTGATGATGGCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGTGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATCGATGAGGACAACATGGCTAAGCCACGAAGAGGCCGAGGCCGGCCGAGGAAATCAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAGAGCAGTGAAATGGTGCCCTGAAATAGACTATGCTTCCAAGGACCACATTAATGATGCCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGGGAATGAACCACCACGAAGAGGCCGAGGCCGGCCAAGAAAAACAGAGAAAGCAGCACCGAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGGCCACATTGATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGGAAGCAGCAGCAGAAGTATCATTTCCTTCTACAAGTAAAATATTGAGTAGTTCTGTCAAAACTGGAGATGTGGAGAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTGAATCTGAATGA | 1443 | 0.447 | MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFSMEFGDGVPNPVYLKPPDGTAWKIDWSEYHGGILFENGWKEFASYYSLDHGHMLWFEYNETSNIQVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSASTSKMFTSSAKTEGVKWCPKIDYPSKDHIDDGNMVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWRAEIQYPSKHHIDEDNMAKPRRGRGRPRKSEKAAPKTPSPCTSKMFTSSAKTRAVKWCPEIDYASKDHINDANMVKVENEPPRRGRGRPRKTEKAAPKTPSASTSKMFTSSAKTRCPEIDYPSKDHIDDHNMVKVGNEPPRRGRGRPRKTEKAAPKTPSACTSKMFTSSAKTRCPEIDYPSKGHIDDDNMVKVENEPPRRGRGRPRKKLEAAAEVSFPSTSKILSSSVKTGDVEKGPDKQNWMQCCKNEEASESE | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 219 | 246 | - | - | |
| Arst10g03856 | 480 | PRINTS | High mobility group protein (HMGY) signature | 244 | 256 | IPR000116 | GO:0000785|GO:0003677|GO:0005634|GO:0006355 | |
| Arst10g03856 | 480 | PRINTS | High mobility group protein (HMGY) signature | 297 | 316 | IPR000116 | GO:0000785|GO:0003677|GO:0005634|GO:0006355 | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 126 | 152 | - | - | |
| Arst10g03856 | 480 | PRINTS | AT-hook-like domain signature | 189 | 199 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | PRINTS | AT-hook-like domain signature | 306 | 316 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | PRINTS | AT-hook-like domain signature | 244 | 255 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | SUPERFAMILY | DNA-binding pseudobarrel domain | 4 | 103 | IPR015300 | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 174 | 201 | - | - | |
| Arst10g03856 | 480 | Gene3D | - | 4 | 104 | IPR015300 | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 322 | 337 | - | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 261 | 275 | - | - | |
| Arst10g03856 | 480 | SMART | B3_2 | 11 | 103 | IPR003340 | GO:0003677 | |
| Arst10g03856 | 480 | Pfam | B3 DNA binding domain | 18 | 101 | IPR003340 | GO:0003677 | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 402 | 436 | - | - | |
| Arst10g03856 | 480 | PANTHER | B3 DOMAIN-CONTAINING | 6 | 257 | - | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 204 | 218 | - | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 381 | 395 | - | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 343 | 378 | - | - | |
| Arst10g03856 | 480 | CDD | B3_DNA | 10 | 101 | IPR003340 | GO:0003677 | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 174 | 275 | - | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 290 | 480 | - | - | |
| Arst10g03856 | 480 | MobiDBLite | consensus disorder prediction | 290 | 320 | - | - | |
| Arst10g03856 | 480 | SMART | AT_hook_2 | 246 | 258 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | SMART | AT_hook_2 | 366 | 378 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | SMART | AT_hook_2 | 308 | 320 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | SMART | AT_hook_2 | 189 | 201 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | SMART | AT_hook_2 | 424 | 436 | IPR017956 | GO:0003677 | |
| Arst10g03856 | 480 | ProSiteProfiles | B3 DNA-binding domain profile. | 10 | 103 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst10g03856 | Arst-Chr10 | 105369529 | 105372524 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst10g03856 | 11 | 228 | B3 DNA Binding Superfamily | AT3G18990 | 25.523 | 1.18e-16 | 79.7 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | B3 | Arst10g03856 | B3 | 4.2e-09 | CL0405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst10g03856 | - | - | aip:107622446 | 598.586 |