Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03855 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTTAGACAAAGCCTTGAAGATGGAAATCTTACCATACCAAAAACGTTCAGTATGGAATTTGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATCATGGTGGCATTCTATTTGAAAATGGTTGGAAAGAATTTGCCTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTCTAACATTCAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTGAAGGAGTGAAATGGTGCCCCAAAATAGACTATCCTTCCAAGGACCACATTGATGATGGCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGGGAATGAACCACCACGAAGAGGCCGAGGCCGGCCAAGAAAAACAGAGAAAGCAGCACCGAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGGCCACATTGATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGGAAGCAGCAGCAGAAGTATCATTTCCTTCTACAAGTAAAATATTGAGTAGTTCTGTCAAAACTGGAGATGTGGAGAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTGAATCTGAATGA 1086 0.4374 MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFSMEFGDGVPNPVYLKPPDGTAWKIDWSEYHGGILFENGWKEFASYYSLDHGHMLWFEYNETSNIQVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSASTSKMFTSSAKTEGVKWCPKIDYPSKDHIDDGNMVKVENEPPRRGRGRPRKTEKAAPKTPSASTSKMFTSSAKTRCPEIDYPSKDHIDDHNMVKVGNEPPRRGRGRPRKTEKAAPKTPSACTSKMFTSSAKTRCPEIDYPSKGHIDDDNMVKVENEPPRRGRGRPRKKLEAAAEVSFPSTSKILSSSVKTGDVEKGPDKQNWMQCCKNEEASESE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03855 361 PANTHER B3 DOMAIN-CONTAINING 6 230 - -
Arst10g03855 361 MobiDBLite consensus disorder prediction 283 317 - -
Arst10g03855 361 MobiDBLite consensus disorder prediction 224 259 - -
Arst10g03855 361 MobiDBLite consensus disorder prediction 126 152 - -
Arst10g03855 361 MobiDBLite consensus disorder prediction 262 276 - -
Arst10g03855 361 Gene3D - 4 104 IPR015300 -
Arst10g03855 361 MobiDBLite consensus disorder prediction 174 201 - -
Arst10g03855 361 MobiDBLite consensus disorder prediction 174 361 - -
Arst10g03855 361 MobiDBLite consensus disorder prediction 203 218 - -
Arst10g03855 361 SMART B3_2 11 103 IPR003340 GO:0003677
Arst10g03855 361 SUPERFAMILY DNA-binding pseudobarrel domain 4 103 IPR015300 -
Arst10g03855 361 CDD B3_DNA 10 101 IPR003340 GO:0003677
Arst10g03855 361 PRINTS AT-hook-like domain signature 189 199 IPR017956 GO:0003677
Arst10g03855 361 PRINTS AT-hook-like domain signature 303 313 IPR017956 GO:0003677
Arst10g03855 361 PRINTS AT-hook-like domain signature 245 256 IPR017956 GO:0003677
Arst10g03855 361 PRINTS High mobility group protein (HMGY) signature 245 257 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst10g03855 361 PRINTS High mobility group protein (HMGY) signature 294 313 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst10g03855 361 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Arst10g03855 361 SMART AT_hook_2 189 201 IPR017956 GO:0003677
Arst10g03855 361 SMART AT_hook_2 247 259 IPR017956 GO:0003677
Arst10g03855 361 SMART AT_hook_2 305 317 IPR017956 GO:0003677
Arst10g03855 361 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03855 Arst-Chr10 105369529 105372524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03855 11 221 B3 DNA Binding Superfamily AT3G18990 25.431 6.37e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03855 B3 2.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03855 - - adu:107471693 569.311