Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03854 ATGTTCAAGTCGAAAAATCCTTCTTTTGTCATCAAGATTAAGCAAAAGCAACAAACAGGATCACCGGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACAATGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCGTTAAAGAAAATAACTTAAAAGCCGGAAATGTTTGCATCTTTGAGCTCATTAACAGACAAGATCCAGAACTTAAGGTTCATATTCGTCGAAGCCATGATTAG 315 0.3778 MFKSKNPSFVIKIKQKQQTGSPANLPVCFFRMYFENTKQYAILRVGKKQWHATMIYYPNRKNALISNWRLFVKENNLKAGNVCIFELINRQDPELKVHIRRSHD 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03854 104 ProSiteProfiles B3 DNA-binding domain profile. 48 103 IPR003340 GO:0003677
Arst10g03854 104 Pfam B3 DNA binding domain 25 102 IPR003340 GO:0003677
Arst10g03854 104 SUPERFAMILY DNA-binding pseudobarrel domain 2 102 IPR015300 -
Arst10g03854 104 CDD B3_DNA 25 101 IPR003340 GO:0003677
Arst10g03854 104 SMART B3_2 9 103 IPR003340 GO:0003677
Arst10g03854 104 Gene3D - 1 104 IPR015300 -
Arst10g03854 104 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 102 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03854 Arst-Chr10 105368204 105369113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03854 1 104 REM Transcription Factor Family AT1G49480 29.524 3.32e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03854 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03854 - - adu:110276721 219.55