Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03853 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTTAGACAAAGCCTTGAAGATGGAAATCTTACCATACCAAAAACGTTCAGTATGGAATTTGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATCATGGTGGCATTCTATTTGAAAATGGTTGGAAAGAATTTGCCTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTCTAACATTCAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTGAAGGAGTGAAATGGTGCCCCAAAATAGACTATCCTTCCAAGGACCACATTGATGATGGCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGTGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATCGATGAGGACAACATGGCTAAGGTCAGGGACGGATTTATATTGCCACGAAGAGGCCGAGGCCGGCCGAGGAAATCAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAGAGCAGTGAAATGGTGCCCTGAAATAGACTATGCTTCCAAGGACCACATTAATGATGCCAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATCACAACATGGTTAAGGTTGGGAATGAACCACCACGAAGAGGCCGAGGCCGGCCAAGAAAAACAGAGAAAGCAGCACCGAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGGCCACATTGATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGAGTAGTTCTGTCAAAACTGGAGATGTAGAGAAGGCCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAATGA 1464 0.446 MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFSMEFGDGVPNPVYLKPPDGTAWKIDWSEYHGGILFENGWKEFASYYSLDHGHMLWFEYNETSNIQVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSASTSKMFTSSAKTEGVKWCPKIDYPSKDHIDDGNMVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWRAEIQYPSKHHIDEDNMAKVRDGFILPRRGRGRPRKSEKAAPKTPSPCTSKMFTSSAKTRAVKWCPEIDYASKDHINDANMVKVENEPPRRGRGRPRKTEKAAPKTPSASTSKMFTSSAKTRCPEIDYPSKDHIDDHNMVKVGNEPPRRGRGRPRKTEKAAPKTPSACTSKMFTSSAKTRCPEIDYPSKGHIDDDNMVKVENEPPRRGRGRPRKKLKAAAEVSSPSTSKILSSSVKTGDVEKAPDKQNWMQCCKNEEASQSE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03853 487 MobiDBLite consensus disorder prediction 300 327 - -
Arst10g03853 487 Gene3D - 4 104 IPR015300 -
Arst10g03853 487 MobiDBLite consensus disorder prediction 329 344 - -
Arst10g03853 487 MobiDBLite consensus disorder prediction 126 152 - -
Arst10g03853 487 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Arst10g03853 487 PRINTS High mobility group protein (HMGY) signature 251 263 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst10g03853 487 PRINTS High mobility group protein (HMGY) signature 304 323 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst10g03853 487 MobiDBLite consensus disorder prediction 238 279 - -
Arst10g03853 487 SMART AT_hook_2 373 385 IPR017956 GO:0003677
Arst10g03853 487 SMART AT_hook_2 431 443 IPR017956 GO:0003677
Arst10g03853 487 SMART AT_hook_2 253 265 IPR017956 GO:0003677
Arst10g03853 487 SMART AT_hook_2 189 201 IPR017956 GO:0003677
Arst10g03853 487 SMART AT_hook_2 315 327 IPR017956 GO:0003677
Arst10g03853 487 MobiDBLite consensus disorder prediction 300 474 - -
Arst10g03853 487 MobiDBLite consensus disorder prediction 174 218 - -
Arst10g03853 487 MobiDBLite consensus disorder prediction 388 402 - -
Arst10g03853 487 MobiDBLite consensus disorder prediction 174 201 - -
Arst10g03853 487 MobiDBLite consensus disorder prediction 350 385 - -
Arst10g03853 487 MobiDBLite consensus disorder prediction 409 433 - -
Arst10g03853 487 SMART B3_2 11 103 IPR003340 GO:0003677
Arst10g03853 487 PRINTS AT-hook-like domain signature 313 324 IPR017956 GO:0003677
Arst10g03853 487 PRINTS AT-hook-like domain signature 371 381 IPR017956 GO:0003677
Arst10g03853 487 PRINTS AT-hook-like domain signature 253 263 IPR017956 GO:0003677
Arst10g03853 487 MobiDBLite consensus disorder prediction 204 218 - -
Arst10g03853 487 PANTHER B3 DOMAIN-CONTAINING 6 257 - -
Arst10g03853 487 CDD B3_DNA 10 101 IPR003340 GO:0003677
Arst10g03853 487 SUPERFAMILY DNA-binding pseudobarrel domain 4 103 IPR015300 -
Arst10g03853 487 MobiDBLite consensus disorder prediction 238 256 - -
Arst10g03853 487 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Arst10g03853 487 MobiDBLite consensus disorder prediction 446 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03853 Arst-Chr10 105338607 105372524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03853 11 228 B3 DNA Binding Superfamily AT3G18990 25.523 1.19e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03853 B3 4.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03853 - - aip:107622446 593.193