Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03850 ATGCCAAACAAGTTCCGTAGGAAATATGGTGGTGATATGCCAAATCCAGTGAAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGACGGTGAGATTTTGTTTGAAAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGACTGCCCTCGAAATTGATTATCCTTCCAATGGTCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGACCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACAAGCAAAAAAATGAAAAGTGCCATCAAAACTAAAGATAAAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATCAAGATTAAGCAAAAGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCGTTAAAGAAAATAACTTAAAAGCCGGAGATGTTTGCATCTTTGAGCTCATTAACAGACAAGATCCAGAACTTAAGGTTCATATTCGTCGAAGCCATGATTAG 867 0.4014 MPNKFRRKYGGDMPNPVKLQPPDGTEWRIDWTNRDGEILFEKGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMTALEIDYPSNGRIGDDNSVEILDEPPPRRDRGRPKKKVIAEPKQSRASTSKKMKSAIKTKDKDKNPNTQNLKLHVENEKDGQSEETADLKLPIIQRARPDMDVIREAKKFKSKNPSFVIKIKQKHQTGSPANLPVCFFRMYFENTKQYAILRVGKKQWHATLIYYPNRKNALISNWRLFVKENNLKAGDVCIFELINRQDPELKVHIRRSHD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03850 288 CDD B3_DNA 209 285 IPR003340 GO:0003677
Arst10g03850 288 Gene3D - 1 78 IPR015300 -
Arst10g03850 288 PANTHER B3 DOMAIN-CONTAINING 1 275 - -
Arst10g03850 288 MobiDBLite consensus disorder prediction 90 161 - -
Arst10g03850 288 MobiDBLite consensus disorder prediction 130 161 - -
Arst10g03850 288 ProSiteProfiles B3 DNA-binding domain profile. 232 287 IPR003340 GO:0003677
Arst10g03850 288 SMART B3_2 2 77 IPR003340 GO:0003677
Arst10g03850 288 SMART B3_2 193 287 IPR003340 GO:0003677
Arst10g03850 288 Gene3D - 174 288 IPR015300 -
Arst10g03850 288 SUPERFAMILY DNA-binding pseudobarrel domain 1 84 IPR015300 -
Arst10g03850 288 CDD B3_DNA 1 75 IPR003340 GO:0003677
Arst10g03850 288 MobiDBLite consensus disorder prediction 1 21 - -
Arst10g03850 288 Pfam B3 DNA binding domain 2 75 IPR003340 GO:0003677
Arst10g03850 288 Pfam B3 DNA binding domain 209 286 IPR003340 GO:0003677
Arst10g03850 288 MobiDBLite consensus disorder prediction 93 118 - -
Arst10g03850 288 SUPERFAMILY DNA-binding pseudobarrel domain 186 286 IPR015300 -
Arst10g03850 288 ProSiteProfiles B3 DNA-binding domain profile. 1 77 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03850 Arst-Chr10 105334007 105338194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03850 1 288 B3 DNA Binding Superfamily AT3G18990 26.875 4.86e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03850 B3 1.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03850 - - aip:107621185 553.132