Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03843 ATGAATGAGGAAGATCAAGCCACACCACCACCCATGAATAATTCCAATGCAGTCCTTTTCTTCAAGATCATACTTTCAACAACTCTTGAAGATGGAAAACTTAAGATCCCAAACAGTTTCACTAAAAAATATGGTGATGGCCTTTCAAACCCAGTGTTTCTTAAGCCTCCGGATGGAACCGAATGGAAAGTAGAATGGACTAAGCAAGATGATGGGATTTTTCTTGAACATGGTTGGAATGAGTTTGCTATGTATTACTCTCTAGATCATGGGCATTTGCTGTTTTTTGAGTACAAAAACACTTCTCAATTTGAGGTACAAATATGTGAAGTGAGTGGCCTTGAAATAGATTATCCTTTCCATGTCATTCAACAAGAAAATGAAAACATTGAACAGATCAGTCATGAGGCAGATCAAGTGTTCGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCACCAATGTTTTATCCTCAGCCATCAAACACAACTAGAGAAGTTAGAACAAGCTGCAGTTTGCAAAACTTGCCTCTTATTCACCAAATTAATGGTGATGAGTGTCAAGGAACAAGCTTTGACAAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAACGGTTAAAGCAAACCTTAAACAAAGCTACAACTTCCAAATCTAAACAAAACCCCTCTTTCATGGTTATCATGAAACCTTCCTATGCTAACAGTTACTCAATGAATATCCCTTCAAAATTCACAGCAAAATATTTGAAGAAGCAAGCAACAGCCATCCTTGAGGTCCATGATGGGGGGAGAACATGGGCTGTTACTTACAGTTTTGGCAAATTCAGTTCTGGATGGAAGAGATTTGCAAAAGACAATAGTTTGAATGTAGGGGACATTTGTGTTTTTGAGCTCACCAATCCCAAAGACCTTTATTTTAAGGTATCCATAACTCGAATTGAAGAAGAGGAACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGAACCAGGGAAAGTCAATTATGTTGAAAGCAAGAGTGACATTATGATTAAAGTCAAAAAGGAAACTCAAGAAACTTCAATGGCGACTCCTCCTGGCTTTGAGCCAAATGAAGAAGCCCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGATCATTATAAAGCCGAGCTTTCTGAGGCAACGCAGACCGAGTATACCAGCTTTCTTCATCAGAAATTACCTCAAAAAGACTCATATTGTGACATTCAAGTTTGGAGAGACACGGTGGCGTATAAAGTTGCTGCGTTACACAAGATACAGAAGTCCAATCACATTATCGAATGGTTGGAGCCTATTTTGTAGAGGAAGTAGATTGAAAGCAGGAGATGTTTGCATCTTTGAGCTAATCAACAAAGAAGACGCAGCGTTTGATGTTCACTTGTTTAGGTGCCACTCTTAG 1488 0.3858 MNEEDQATPPPMNNSNAVLFFKIILSTTLEDGKLKIPNSFTKKYGDGLSNPVFLKPPDGTEWKVEWTKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQFEVQICEVSGLEIDYPFHVIQQENENIEQISHEADQVFDDMPQSQNNRMKSPMFYPQPSNTTREVRTSCSLQNLPLIHQINGDECQGTSFDKSTFASIKKELDEDIGGSTPCPRVERLKQTLNKATTSKSKQNPSFMVIMKPSYANSYSMNIPSKFTAKYLKKQATAILEVHDGGRTWAVTYSFGKFSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVSITRIEEEELPLSQVEGDRVNCLEPGKVNYVESKSDIMIKVKKETQETSMATPPGFEPNEEALKEAKKFTSENPFFMIIIKPSFLRQRRPSIPAFFIRNYLKKTHIVTFKFGETRWRIKLLRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAAFDVHLFRCHS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03843 495 CDD B3_DNA 397 492 IPR003340 GO:0003677
Arst10g03843 495 SMART B3_2 398 494 IPR003340 GO:0003677
Arst10g03843 495 SMART B3_2 239 329 IPR003340 GO:0003677
Arst10g03843 495 SMART B3_2 20 112 IPR003340 GO:0003677
Arst10g03843 495 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Arst10g03843 495 SUPERFAMILY DNA-binding pseudobarrel domain 234 332 IPR015300 -
Arst10g03843 495 CDD B3_DNA 237 327 IPR003340 GO:0003677
Arst10g03843 495 Gene3D - 12 113 IPR015300 -
Arst10g03843 495 ProSiteProfiles B3 DNA-binding domain profile. 238 329 IPR003340 GO:0003677
Arst10g03843 495 CDD B3_DNA 19 109 IPR003340 GO:0003677
Arst10g03843 495 Pfam B3 DNA binding domain 239 325 IPR003340 GO:0003677
Arst10g03843 495 Pfam B3 DNA binding domain 398 492 IPR003340 GO:0003677
Arst10g03843 495 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Arst10g03843 495 Coils Coil 123 143 - -
Arst10g03843 495 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 380 493 IPR044837 -
Arst10g03843 495 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Arst10g03843 495 ProSiteProfiles B3 DNA-binding domain profile. 398 494 IPR003340 GO:0003677
Arst10g03843 495 SUPERFAMILY DNA-binding pseudobarrel domain 392 493 IPR015300 -
Arst10g03843 495 Gene3D - 380 494 IPR015300 -
Arst10g03843 495 Gene3D - 218 330 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03843 Arst-Chr10 105295838 105299472 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03843 380 494 B3 DNA Binding Superfamily AT3G18990 33.333 1.50e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03843 B3 5.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03843 - - adu:107471690 1018.84