Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03839 ATGCCTTTACATGAAAGAGGTTTCTTTAAAGTTCTTGTTCAAAGCTTTAAGCATGAGTTGTTATTATTAACATGCTTGCTTTGGTTACAGAAAATTCCTAAAGTTTTTGTGAAAGAATATTGGAGAGGAGTATCAAATCCTATAGTGTTAAAGCTACCAAACACTCTTAAACAAAGAGTATATTGGATTCAAAAGAATGAAGGTGAAATTTGGTTGGAAGAAGGTTGGGATCAAGTTGTGAAGGATTTTGGCTTAGAATATTCTCAGTTTTTGACTTTTGATTATAAAGGATGGTCTTGCTTTGAAGTCAAAATATATCCTATGAAGGATTCTGAGATAATGCCTCCTCATCATCAAATATGTTTCTTTCAGATTCTTGCTCACAACAAGTTTTACCAAAAGCTGATGATTCCTAAATGTGCAAATGAATATTGGAAAAGAATGTCAAACCCTATAAAATTGGTATTACCTTGTGGTAGTGTTGAGAGGAAAGTGATGTGGACCAAAAGAGGAGAAAATATTTGGTTGGAACAAGGTTGGGAAAAGGTTGTGGAGTTGTGTGGTTTGAGTTATGAGTGGTTGTTGACTTTTGACTACAATGGAAGGTCTAGTTTTGAAGTCAAAGTATATGATACCACTGGTTTAAGGGTAGCTTATTATAATTTTGATGAGTATGATGTTGAGAATAATAAAGATGTTGATGAAACTGAGAGCGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGGATGATGATGATTTTGCTGATGATTATTGTGATGAAGAATATCATCATTATGAGTTTGTTCAAGAACACTTCAAGAGAAAGAAGATCAACACAGTTAATGGGAGCAATAGGAATCCCAGTTTCAAGATTCGAATTCAAGAATCATATGTTGAGTCAAGATGCGTGGCAATACCAGCAACGTTTGCAAGGAAGCATTTGGAGGAAGGACCGATTCGTATGATTGTGGGTAACAGAGCTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGGGCCAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGAGGTTGGTGATGTTTGTGTCTTTGAGTTAATTAGCAAATTTCCTCAGACAATGATCGTCAGAGTGCAGAGTGGATGA 1188 0.3586 MPLHERGFFKVLVQSFKHELLLLTCLLWLQKIPKVFVKEYWRGVSNPIVLKLPNTLKQRVYWIQKNEGEIWLEEGWDQVVKDFGLEYSQFLTFDYKGWSCFEVKIYPMKDSEIMPPHHQICFFQILAHNKFYQKLMIPKCANEYWKRMSNPIKLVLPCGSVERKVMWTKRGENIWLEQGWEKVVELCGLSYEWLLTFDYNGRSSFEVKVYDTTGLRVAYYNFDEYDVENNKDVDETESDDDDDDDDDDDDDDDDDDDDEDDDDFADDYCDEEYHHYEFVQEHFKRKKINTVNGSNRNPSFKIRIQESYVESRCVAIPATFARKHLEEGPIRMIVGNRAWTVCYKTWRGRARYRKHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMIVRVQSG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03839 395 Gene3D - 277 394 IPR015300 -
Arst10g03839 395 Gene3D - 114 214 IPR015300 -
Arst10g03839 395 Gene3D - 3 109 IPR015300 -
Arst10g03839 395 ProSiteProfiles B3 DNA-binding domain profile. 299 395 IPR003340 GO:0003677
Arst10g03839 395 SMART B3_2 300 393 IPR003340 GO:0003677
Arst10g03839 395 SMART B3_2 8 109 IPR003340 GO:0003677
Arst10g03839 395 SMART B3_2 122 213 IPR003340 GO:0003677
Arst10g03839 395 SUPERFAMILY DNA-binding pseudobarrel domain 295 393 IPR015300 -
Arst10g03839 395 SUPERFAMILY DNA-binding pseudobarrel domain 8 107 IPR015300 -
Arst10g03839 395 SUPERFAMILY DNA-binding pseudobarrel domain 118 212 IPR015300 -
Arst10g03839 395 MobiDBLite consensus disorder prediction 230 264 - -
Arst10g03839 395 Pfam B3 DNA binding domain 300 392 IPR003340 GO:0003677
Arst10g03839 395 PANTHER B3 DOMAIN-CONTAINING 7 113 - -
Arst10g03839 395 CDD B3_DNA 8 107 IPR003340 GO:0003677
Arst10g03839 395 CDD B3_DNA 298 392 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03839 Arst-Chr10 105277526 105279514 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03839 115 381 B3 DNA Binding Superfamily AT3G18990 23.353 6.86e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03839 B3 5.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03839 - - adu:107471689 778.089