Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03835 ATGTCTTCTCAAGAACGTGATGTCGTTCACTTCTTCAAGGTTATTCTTGAAAAGAACCTTCTTGGTGATGGATTTCTGAGATTGCCAAAGAGTTTTGTGCATAAATACTGGAAAGAAATTACGTCACGTTCTGTTTTTCTAAGTCTTCCAAACGGAGCTGAATTGGAAGTTCATTGGTCAAGGGATGAAAACGGTGACGTTTTGTTTGGCCACGGTTGGAAAGAATTTGCACAATACGTGTCTCTCCAAGCGACACAGTTTCTCTTGTTCCGTTACGAAGTGAAAAAAACTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGTTTTATGTTATAGTTTTGGGTTCAAGTGGTTTAGAAATTAAGTACCCTTGTTCTAATTCTGTGTCAAAGAAAAAAAATGATAATGTTAATGTTAATGTTGTTGAAAAAGGGCAAAAGGGTGAAAAAAAGAGTGATGCTTGTTCTTTTGAGTTTGTTAATGGAAAAAGACGAAAATCTCTCTTGTCACCGCTACAATCACCACCTCCACCACCACCACTGGTAATTTCCGATGATGAAACTAGTAGTTTCAAAAGGAAGAAAATTATAAAAGAAGAGCCTGAAGATTACTCTATTGATGGTGAAATCAGTAACACTAAAAGAAAAAGGAGAGCTTCTAGGAGTTTTGATTATATTGCCAAGGAAAAAGATTATGATAACTCAGAAGTGTTGGACAATAAAACCATGAAGAAGTTTCAAGAGAAAGTGAAGAGTAGGTTCCAAACTGGGAATCCCTTTTTTGTATGTGCACTTGGGAAAACCTATTCTGACAGAGACCTCTTGGTTATACCAAGCTATTTTGCTAAACCAATTCTTGGGAAAAGAGAAGGAAATGCAAAGCTCTTTCTTGTTGATGATCCGAAGAAATGTTGGGATGTGCAGATGAGAATTTCTGCTTGCAGGCAATTTATAATTACAAATGGTTGGAAGAAATTCTCAACATTCTATAGTTTGAAACTTGGTGACGCTTGTGTCTTTGAGTTGGTCGATCCAATCGATATTTTATTCAAAGTTCATATTCGTAGTTATGGAGAAGACCCTTTGACTCCTAGCTCTTCTGGTGATACCAACTGA 1143 0.3482 MSSQERDVVHFFKVILEKNLLGDGFLRLPKSFVHKYWKEITSRSVFLSLPNGAELEVHWSRDENGDVLFGHGWKEFAQYVSLQATQFLLFRYEVKKTNNNNNNNNNNNNNNNNNNNKFYVIVLGSSGLEIKYPCSNSVSKKKNDNVNVNVVEKGQKGEKKSDACSFEFVNGKRRKSLLSPLQSPPPPPPLVISDDETSSFKRKKIIKEEPEDYSIDGEISNTKRKRRASRSFDYIAKEKDYDNSEVLDNKTMKKFQEKVKSRFQTGNPFFVCALGKTYSDRDLLVIPSYFAKPILGKREGNAKLFLVDDPKKCWDVQMRISACRQFIITNGWKKFSTFYSLKLGDACVFELVDPIDILFKVHIRSYGEDPLTPSSSGDTN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03835 380 SUPERFAMILY DNA-binding pseudobarrel domain 263 365 IPR015300 -
Arst10g03835 380 Pfam B3 DNA binding domain 11 94 IPR003340 GO:0003677
Arst10g03835 380 Pfam B3 DNA binding domain 278 364 IPR003340 GO:0003677
Arst10g03835 380 MobiDBLite consensus disorder prediction 176 195 - -
Arst10g03835 380 ProSiteProfiles B3 DNA-binding domain profile. 269 365 IPR003340 GO:0003677
Arst10g03835 380 Gene3D - 248 366 IPR015300 -
Arst10g03835 380 Gene3D - 2 102 IPR015300 -
Arst10g03835 380 CDD B3_DNA 284 365 IPR003340 GO:0003677
Arst10g03835 380 PANTHER B3 DOMAIN-CONTAINING 3 239 - -
Arst10g03835 380 ProSiteProfiles B3 DNA-binding domain profile. 11 126 IPR003340 GO:0003677
Arst10g03835 380 CDD B3_DNA 10 93 IPR003340 GO:0003677
Arst10g03835 380 SMART B3_2 270 367 IPR003340 GO:0003677
Arst10g03835 380 SMART B3_2 11 101 IPR003340 GO:0003677
Arst10g03835 380 SUPERFAMILY DNA-binding pseudobarrel domain 5 93 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03835 Arst-Chr10 105241861 105244797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03835 11 361 B3 DNA Binding Superfamily AT3G18990 24.317 1.15e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03835 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03835 - - ahf:112717071 657.907