LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g03727	ATGGCTGTACGGCAGGGAAATTCTGAAGGGTCAACAGGAGCTTGCCTTTTTGATCTCTTCTGCTCTGAAACACCAAGTTTGAATTCCCAAAGTCAAAGAAGCCAATGGCTACCTCATGTAACTCCACAAGAAAGGCTCGACAATCTGATGCGTCAAGCGGGGAACAGGTTCTGTGCCGATTGCGGATCATCAGATCCAAAATGGGCGTCTTCAAGTCTTGGAGTATTTATTTGCATCCAATGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCGAAGGTTCTATCGCTGAAACTAGATGACTGGACAGACGAACAAGTTGATGAATTGGTGAAATTGGGTGGAAATACAGTAATCAATAAGAGGTATGAAGCTTGTGTCCCAAATAACATTAAAAAACCAAAACCGCATTCTTCCATCGAAGAGCGTGCAGATTATATCAGAAGAAAATACGAACTTCTACAGTTTTTGGATACGGAGAAAAATTTGCAATGCTCCTTTCCACTATCTCCACAAAGATATTTAACATGCTCCCCAAGCAACGCTGCTTCCTGTGGGTTTCAAATGGACAAAAGACATTACGAAAAGCAAACAACTAAAGCTCGTATTGGGACTGCACTCCGACACAGCTGGGGAAGAAAGGAATCCGAGCATAAGATTTCAAAGAAGAGTACTTCGTTGGCAGGTATGGTTCAATTTGTTGGGTTGATCAAGGTTAATGTCGTTAAAGGAACTAACCTGGCTGTCCGGGATGTTGTGACTAGCGACCCTTATGTCATGCTTTCTCTTGGTCACCAATCGGTGAAGACTCGTGTCATAAAGAACAACTTGAATCCAGTTTGGAATGAAAGCTTAATGCTCTCGATTCCAGAGCACGTTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCGACCGATGATTTTATGGGCGAGGCTGAAATAGACATTCAACCTCTAGTAACTGCTGCAAAGGCATACGAGAAATCTTCGATCAACGAGTCAATGCAGCTCGGAAAATGGGTAGCAAGCGGCGAAAACACTCTTGTTAAAGATGGTATCATCACCCTAGAAGAAGGGAAGGTCAAACAAGAGATACAGTTGAGGTTACAGAAGGTTGAGCGAGGAGTTTTAGACATTGAGCTTGAATGTCTTCCTCTTACTCAATAG	1179	0.4283	MAVRQGNSEGSTGACLFDLFCSETPSLNSQSQRSQWLPHVTPQERLDNLMRQAGNRFCADCGSSDPKWASSSLGVFICIQCSGIHRSLGVHISKVLSLKLDDWTDEQVDELVKLGGNTVINKRYEACVPNNIKKPKPHSSIEERADYIRRKYELLQFLDTEKNLQCSFPLSPQRYLTCSPSNAASCGFQMDKRHYEKQTTKARIGTALRHSWGRKESEHKISKKSTSLAGMVQFVGLIKVNVVKGTNLAVRDVVTSDPYVMLSLGHQSVKTRVIKNNLNPVWNESLMLSIPEHVPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVTAAKAYEKSSINESMQLGKWVASGENTLVKDGIITLEEGKVKQEIQLRLQKVERGVLDIELECLPLTQ	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g03727	392	Gene3D	C2 domain	234	383	IPR035892	-
	Arst10g03727	392	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	232	327	IPR035892	-
	Arst10g03727	392	PRINTS	HIV Rev interacting protein signature	74	91	IPR001164	GO:0005096
	Arst10g03727	392	PRINTS	HIV Rev interacting protein signature	55	74	IPR001164	GO:0005096
	Arst10g03727	392	PRINTS	HIV Rev interacting protein signature	95	116	IPR001164	GO:0005096
	Arst10g03727	392	FunFam	stromal membrane-associated protein 1 isoform X1	28	163	-	-
	Arst10g03727	392	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	43	165	IPR001164	GO:0005096
	Arst10g03727	392	Gene3D	Arf GTPase activating protein	26	166	IPR038508	-
	Arst10g03727	392	Pfam	C2 domain	237	326	IPR000008	-
	Arst10g03727	392	Pfam	Putative GTPase activating protein for Arf	44	158	IPR001164	GO:0005096
	Arst10g03727	392	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	39	392	IPR044518	GO:0005096\|GO:0005543
	Arst10g03727	392	ProSiteProfiles	C2 domain profile.	215	334	IPR000008	-
	Arst10g03727	392	CDD	ArfGap	46	152	-	-
	Arst10g03727	392	SMART	C2_3c	237	332	IPR000008	-
	Arst10g03727	392	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	234	392	-	-
	Arst10g03727	392	CDD	C2_ArfGAP	235	379	-	-
	Arst10g03727	392	SUPERFAMILY	ArfGap/RecO-like zinc finger	43	158	IPR037278	-
	Arst10g03727	392	SMART	arf_gap_3	44	165	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g03727	Arst-Chr10	104631586	104635863	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g03727	43	392	C2H2 Transcription Factor Family	AT4G05330	46.571	1.84e-115	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g03727	K12486		-	gmx:100799376	605.905