Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03712 ATGAGTATGTTAGGCCTCACAGACTTGGTTTTCATAGCTCCAAATCCTTCTTCTCTTCACCACCATCGCCAACAACAACTGATGTCAACGGAAAACGACAACAACAACAGCAACAACAACCCTCTGAGCGTTGGTTTCGGCATTTTTCCACTCTTAGCTGCCACGCCCTGCGTTCAGGTAGTTCAGAATCAGAGCAATGAGGAGGCGATGGAAGATTCTGGAAAGAAGAAGAAGAAGATCGACGAAGATGAAAATGGCAGTGAATTTAGGGTTTGTACGGACTGTGGAAACAGAGCGAAGAAAGATTGCGTGTACAGACGGTGCAGGAGTTGTTGCAAGGGGCGGGGATATGACTGTACCACTCACGTGAGGAGCACGTGGGTGCCTGCTCTAAAACGCCGCGAGCGCCACGTGGCGGTGACTGGTGGTGTTGGTGGAGAAGCTGCTAATAAGAGGACAAAGAACAATAATGGATGCGCAAGTGGAAGTGCTACCTCTCATTCTTATACTTCCACCAACTCTGATTCCTGCTATTCTCATCAAGATGCTAGGTTCAAAGAATCATTACCAGGTCATGTTCGTGCACCTGCTGTGTTCAGATGCCATAGAGTCTCAACGGTTGGAAATGGTGAAAATGAATTTGCATATTTAGCAACGGTTCATATAAGTGGCCATGTATTCAGGGGATTTCTCTATGACCATGGTGTTGATCCCAAAAATACAATAATGCCCTCCTATGCTTCAGAACTTCAACTTGGAAACAACTGCATTAGTAATGGGAAGAACAAGGAATGTTCTTCTTCTGCAATTGGGGTTACAACCAATGAATATGATAATCTCTATTCTGCTTCTGCTGCTAGCTAG 864 0.4537 MSMLGLTDLVFIAPNPSSLHHHRQQQLMSTENDNNNSNNNPLSVGFGIFPLLAATPCVQVVQNQSNEEAMEDSGKKKKKIDEDENGSEFRVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVRSTWVPALKRRERHVAVTGGVGGEAANKRTKNNNGCASGSATSHSYTSTNSDSCYSHQDARFKESLPGHVRAPAVFRCHRVSTVGNGENEFAYLATVHISGHVFRGFLYDHGVDPKNTIMPSYASELQLGNNCISNGKNKECSSSAIGVTTNEYDNLYSASAAS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03712 287 Pfam Domain of unknown function (DUF702) 91 237 - -
Arst10g03712 287 MobiDBLite consensus disorder prediction 146 172 - -
Arst10g03712 287 MobiDBLite consensus disorder prediction 150 172 - -
Arst10g03712 287 NCBIfam putative zinc finger domain, LRP1 type 91 133 IPR006510 -
Arst10g03712 287 NCBIfam LRP1 C-terminal domain 189 236 IPR006511 -
Arst10g03712 287 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 24 269 IPR007818 GO:0003700|GO:0006355
Arst10g03712 287 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03712 Arst-Chr10 104517400 104521041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03712 1 270 C2H2 Transcription Factor Family AT5G12330 35.065 1.55e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Arst10g03712 DUF702 4e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03712 - - adu:107472019 581.637