LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g03658	ATGATGGAAGCAAAACTCACTGGTTCCCTCCATAGATTATTTCTTTGGTTCTTGTTGATGAACATCTTCATCACCATCACCAGAACAAGAGCACAATCATCATCACTGAACTACGTTGGAGATGACTGCCAAAACTCAACACAACAATCTCTAACAACTGGATTCAAAACCAACCTCAACAGCCTCCTCTCATGGCTTTCATCTGATGGTGCCACAAGCAAGGGCTACAACTATACCACCGTTGGAACCGCCACACGCGATGTCATCTATGGCTTCTATAACTGCAGAGGTGATGTCACTGGAACCTTCTGCCAGTTTTGCCTCTCCACTGCAGCCGCAGACATTCCTCAGCACTGCCCAAACAGGTCATCAGCAGTGATATGGTATAACTACTGCATATTCAGATACTCCAACCATGCCTTCTATGGTAATCTTACAACAACCCCATCATGGCAAGTTCTTGGAACCAAGAACACCACCAACAGCACACAAGAACTCCAGAAAGCTGAGACTTATATGCAGATTTTGATAAAGAATGCTACTGCGGAGAGCAATTACCTGTTGTATGCAGTGGGTGAGTTCAATGCTGGTGGTTCATTAGGGAAAAGATATGGATTGGTGCAATGTACTAGGGACCTTACTAGTGACAAGTGTAGGCAGTGTTTGAATGCTATGTTGGATCAAGTTCCTAAATGCTGTGCTTCAAAAGTTGGATGGCAAGTTGGATCTCCAAGCTGTTTGACAAGGTATGATGATTATATGTTCTACAAGATTCAAGGATCTTCTCCCTTGCCTAGTTCAGCCAAGAACAGTTCAAGTAAGACAAAAACTTTGATTATCATCATAGTGAGTGTGTTTGTGCCAGTAATCCTACTAATTAGTGGCATCTACTTCATATGGAGGAAGAATCAATCAAATAATGATGCATTATTGTCTGAGAGCGCTCCTATATCAATAAATTATAACTCTCAAGAAGGTCAAGGAGAAAGTCAAGGAGACGATTCATTGAATGCTGACCTTCCTACAGTCCCTCTAATTTGGATTCGACAGAGCACTAATAACTTTTCAGATTCTTGCAAATTAGGAGAAGGTGGATTTGGTCCTGTTTATAAGGGAAGTTTGCAAGATGGGACAGAAGTTGCCATCAAAAGACTTTCTAAAACATCTGGCCAAGGTTTATATGAGTTCAAGAATGAAGTAATATTCATAGCCAAATTACAACATAGAAACCTTGTGAGACTGTTGGGTTGTTGTGTTGAGCAAAATGAAAAGCTGCTTATATACGAATACATGTCGAATTCAAGCCTTGCCCTTCACCTATTCGATGTGGAAAAGCGAAAGCAACTAAGTTGGAAGGTTCGAATGAATATTATTAAAGGAATCGCACGAGGACTTCTATACCTACACGAAGATTCTAGACTTAGAGTAATTCATAGAGATATGAAAGCTAGTAATGTTCTACTTGATCAAGATATGAATCCAAAAATATCAGATTTTGGATTAGCAAGAACATTTGAAAAAGGCCAGAACGAAGACAGTACTAGAAGGGTTGTGGGTACCTACGGATATATGGCTCCTGAATATGCCATGGAAGGATTATACTCAGTAAAATCAGATGTTTTTAGTTTTGGAGTTCTTCTACTAGAAATCATTTGTGGCAAAAGGAATAATAAATTCTATGTTTCAGAACATGGTCAAAGTCTTCTTGAATATAGTTGGAGACTATGGTGTACAGGAGAATGTTTAAAGCTAGTAGATCCTATATTAGAAAATAAATACACAAGAAATGAAGTTACAAGGTGTATACATATTGGTTTATTGTGTGTACAAGAAGATGCAGTAGATCGGCCGACAATGTCAACGGTGGTTGTTATGCTAGCAAGTGAGACAATGACACTTCCTATTCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATCAAAGAAGAGCCAACATCAAGTGCTTTTGATAAGGATCCTTTGGTCAATGAAGTATCAATTTCAAATATTCTACCTAGATAA	2022	0.3907	MMEAKLTGSLHRLFLWFLLMNIFITITRTRAQSSSLNYVGDDCQNSTQQSLTTGFKTNLNSLLSWLSSDGATSKGYNYTTVGTATRDVIYGFYNCRGDVTGTFCQFCLSTAAADIPQHCPNRSSAVIWYNYCIFRYSNHAFYGNLTTTPSWQVLGTKNTTNSTQELQKAETYMQILIKNATAESNYLLYAVGEFNAGGSLGKRYGLVQCTRDLTSDKCRQCLNAMLDQVPKCCASKVGWQVGSPSCLTRYDDYMFYKIQGSSPLPSSAKNSSSKTKTLIIIIVSVFVPVILLISGIYFIWRKNQSNNDALLSESAPISINYNSQEGQGESQGDDSLNADLPTVPLIWIRQSTNNFSDSCKLGEGGFGPVYKGSLQDGTEVAIKRLSKTSGQGLYEFKNEVIFIAKLQHRNLVRLLGCCVEQNEKLLIYEYMSNSSLALHLFDVEKRKQLSWKVRMNIIKGIARGLLYLHEDSRLRVIHRDMKASNVLLDQDMNPKISDFGLARTFEKGQNEDSTRRVVGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNNKFYVSEHGQSLLEYSWRLWCTGECLKLVDPILENKYTRNEVTRCIHIGLLCVQEDAVDRPTMSTVVVMLASETMTLPIPNHPAFSVGRKIKEEPTSSAFDKDPLVNEVSISNILPR	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g03658	673	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	320	430	-	-
	Arst10g03658	673	ProSiteProfiles	Gnk2-homologous domain profile.	37	141	IPR002902	-
	Arst10g03658	673	FunFam	cysteine-rich receptor-like protein kinase 10	431	633	-	-
	Arst10g03658	673	Gene3D	-	148	255	IPR038408	-
	Arst10g03658	673	Gene3D	-	36	141	IPR038408	-
	Arst10g03658	673	Pfam	Salt stress response/antifungal	163	253	IPR002902	-
	Arst10g03658	673	Pfam	Salt stress response/antifungal	43	138	IPR002902	-
	Arst10g03658	673	Gene3D	Transferase(Phosphotransferase) domain 1	431	633	-	-
	Arst10g03658	673	SMART	serkin_6	355	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g03658	673	Pfam	Domain of unknown function (DUF3403)	628	673	IPR021820	GO:0004674
	Arst10g03658	673	Gene3D	Phosphorylase Kinase; domain 1	317	430	-	-
	Arst10g03658	673	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	23	667	-	-
	Arst10g03658	673	Pfam	Protein tyrosine and serine/threonine kinase	359	623	IPR001245	GO:0004672\|GO:0006468
	Arst10g03658	673	ProSiteProfiles	Protein kinase domain profile.	355	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g03658	673	CDD	STKc_IRAK	361	626	-	-
	Arst10g03658	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Arst10g03658	673	FunFam	Cysteine-rich receptor-like protein kinase 28	39	140	-	-
	Arst10g03658	673	ProSiteProfiles	Gnk2-homologous domain profile.	147	255	IPR002902	-
	Arst10g03658	673	SUPERFAMILY	Protein kinase-like (PK-like)	340	641	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g03658	Arst-Chr10	104152366	104157362	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g03658	13	673	Receptor kinase-like Gene Family	AT4G05200	41.369	1.66e-166	492

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Arst10g03658		PK_Tyr_Ser-Thr	3.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g03658	-		-	ahf:112718031	1326.23